Variant report

Variant	rs955711
Chromosome Location	chr19:38061441-38061442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1016291	0.84[ASN][1000 genomes]
rs16958869	0.81[ASN][1000 genomes]
rs16972326	0.81[ASN][1000 genomes]
rs16973130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16973541	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16973717	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16973886	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16973887	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16973890	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16973919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16974030	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16974061	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16974081	0.95[AFR][1000 genomes]
rs16974358	0.81[ASN][1000 genomes]
rs16974372	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2045907	0.92[ASN][1000 genomes]
rs2061779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2290998	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2306200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2385128	0.92[ASN][1000 genomes]
rs3795068	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3795070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs41325249	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4330033	0.81[ASN][1000 genomes]
rs4452074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7257547	0.90[AFR][1000 genomes]
rs73632242	0.96[ASN][1000 genomes]
rs8107454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8108032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38032400-38080800	ZNF genes & repeats	Liver	Liver
2	chr19:38032600-38075200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:38038000-38078400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:38038600-38079600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:38041200-38079600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:38045000-38078600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:38046400-38067200	ZNF genes & repeats	Brain Substantia Nigra	brain
8	chr19:38046400-38071800	ZNF genes & repeats	Brain Hippocampus Middle	brain
9	chr19:38046600-38066800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:38046600-38079600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr19:38047400-38067000	ZNF genes & repeats	Brain Anterior Caudate	brain
12	chr19:38047400-38078600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr19:38049200-38079600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr19:38051400-38066800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
15	chr19:38051600-38061600	ZNF genes & repeats	Colon Smooth Muscle	Colon
16	chr19:38051600-38077600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr19:38051600-38078800	ZNF genes & repeats	Fetal Brain Female	brain
18	chr19:38052000-38061800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr19:38052000-38067000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
20	chr19:38052000-38067200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr19:38052200-38061600	ZNF genes & repeats	Dnd41	blood
22	chr19:38052200-38067000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr19:38052200-38075200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
24	chr19:38052200-38078600	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr19:38053200-38063200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr19:38053200-38064600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
27	chr19:38053200-38078200	ZNF genes & repeats	Brain Germinal Matrix	brain
28	chr19:38053200-38078600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:38053400-38061800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
30	chr19:38053400-38064400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
31	chr19:38053400-38078400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
32	chr19:38055000-38066600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
33	chr19:38055200-38065000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr19:38055400-38061600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
35	chr19:38055400-38064800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:38055400-38064800	ZNF genes & repeats	Left Ventricle	heart
37	chr19:38055600-38064800	ZNF genes & repeats	Primary T cells from cord blood	blood
38	chr19:38055600-38064800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr19:38055600-38064800	ZNF genes & repeats	Ovary	ovary
40	chr19:38055600-38067000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
41	chr19:38056600-38063600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
42	chr19:38059600-38064800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
43	chr19:38059600-38064800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr19:38059800-38062000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
45	chr19:38059800-38062400	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr19:38059800-38078000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr19:38060000-38064800	ZNF genes & repeats	Right Ventricle	heart
48	chr19:38060200-38065400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr19:38060400-38062800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr19:38060400-38062800	ZNF genes & repeats	Rectal Smooth Muscle	rectum

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