Variant report

Variant	rs73632242
Chromosome Location	chr19:38011752-38011753
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1016291	0.88[ASN][1000 genomes]
rs16973130	0.96[ASN][1000 genomes]
rs16973541	0.96[ASN][1000 genomes]
rs16973717	0.96[ASN][1000 genomes]
rs16973886	0.96[ASN][1000 genomes]
rs16973890	0.96[ASN][1000 genomes]
rs16973919	0.96[ASN][1000 genomes]
rs16974061	0.96[ASN][1000 genomes]
rs2045907	0.96[ASN][1000 genomes]
rs2061779	0.88[ASN][1000 genomes]
rs2290998	0.84[ASN][1000 genomes]
rs2306200	0.88[ASN][1000 genomes]
rs2385128	0.96[ASN][1000 genomes]
rs3795070	0.88[ASN][1000 genomes]
rs4452074	0.96[ASN][1000 genomes]
rs73632245	0.97[AFR][1000 genomes]
rs8107454	0.96[ASN][1000 genomes]
rs8108032	0.96[ASN][1000 genomes]
rs8110483	0.97[AFR][1000 genomes]
rs8110586	0.94[AFR][1000 genomes]
rs8112900	0.81[ASN][1000 genomes]
rs955711	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37998800-38014000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr19:37998800-38021000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:37998800-38022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:37999000-38013800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37999200-38018400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr19:37999800-38012800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:38002000-38028800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:38004800-38013400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr19:38004800-38013400	Weak transcription	Placenta	Placenta
11	chr19:38006000-38020800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:38007400-38013600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:38008800-38026600	Weak transcription	Fetal Heart	heart
14	chr19:38009000-38013400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr19:38009000-38013400	Weak transcription	Fetal Kidney	kidney
16	chr19:38009400-38020000	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr19:38009800-38013400	Weak transcription	Psoas Muscle	Psoas
18	chr19:38010600-38011800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr19:38010600-38011800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr19:38010600-38011800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr19:38010600-38011800	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr19:38010600-38011800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr19:38010600-38011800	ZNF genes & repeats	NHEK	skin
24	chr19:38010600-38013400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:38010600-38018400	Strong transcription	Fetal Brain Female	brain
26	chr19:38010600-38020600	Strong transcription	Fetal Muscle Leg	muscle
27	chr19:38010800-38011800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:38010800-38011800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr19:38010800-38011800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
30	chr19:38010800-38011800	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr19:38010800-38011800	ZNF genes & repeats	Aorta	Aorta
32	chr19:38010800-38011800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr19:38010800-38011800	ZNF genes & repeats	Fetal Intestine Large	intestine
34	chr19:38010800-38011800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr19:38010800-38011800	ZNF genes & repeats	Ovary	ovary
36	chr19:38010800-38011800	ZNF genes & repeats	Pancreas	Pancrea
37	chr19:38010800-38011800	Strong transcription	Right Ventricle	heart
38	chr19:38010800-38011800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr19:38010800-38011800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
40	chr19:38010800-38011800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
41	chr19:38010800-38011800	ZNF genes & repeats	Spleen	Spleen
42	chr19:38010800-38012000	Strong transcription	Brain Germinal Matrix	brain
43	chr19:38010800-38012000	Strong transcription	Brain Hippocampus Middle	brain
44	chr19:38010800-38012000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr19:38010800-38012200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr19:38010800-38020400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr19:38010800-38020800	Strong transcription	Brain Anterior Caudate	brain
48	chr19:38011000-38011800	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr19:38011000-38011800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr19:38011000-38011800	ZNF genes & repeats	Primary T cells from cord blood	blood

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