Variant report

Variant	rs73632245
Chromosome Location	chr19:38014707-38014708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73617113	1.00[AMR][1000 genomes]
rs73632242	0.97[AFR][1000 genomes]
rs8110483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8110586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37998800-38021000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:37998800-38022600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:37999000-38028800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37999200-38018400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:38002000-38028800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:38006000-38020800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:38008800-38026600	Weak transcription	Fetal Heart	heart
8	chr19:38009400-38020000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr19:38010600-38018400	Strong transcription	Fetal Brain Female	brain
10	chr19:38010600-38020600	Strong transcription	Fetal Muscle Leg	muscle
11	chr19:38010800-38020400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:38010800-38020800	Strong transcription	Brain Anterior Caudate	brain
13	chr19:38011000-38020800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:38011600-38023600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:38011800-38016600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:38012800-38014800	Strong transcription	Fetal Brain Male	brain
17	chr19:38012800-38020800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr19:38013000-38014800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr19:38013000-38015600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr19:38013000-38015800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:38013000-38015800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr19:38013000-38016000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr19:38013000-38017600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
24	chr19:38013000-38017800	ZNF genes & repeats	Ovary	ovary
25	chr19:38013200-38014800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
26	chr19:38013200-38015000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr19:38013200-38015600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr19:38013200-38015800	ZNF genes & repeats	Aorta	Aorta
29	chr19:38013200-38015800	ZNF genes & repeats	Left Ventricle	heart
30	chr19:38013200-38016200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
31	chr19:38013200-38018000	ZNF genes & repeats	Fetal Stomach	stomach
32	chr19:38013200-38019600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:38013200-38020400	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr19:38013200-38020800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr19:38013200-38020800	Strong transcription	Brain Cingulate Gyrus	brain
36	chr19:38013400-38014800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr19:38013400-38014800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr19:38013400-38014800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
39	chr19:38013400-38014800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:38013400-38014800	ZNF genes & repeats	Lung	lung
41	chr19:38013400-38014800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr19:38013400-38015000	Strong transcription	Rectal Smooth Muscle	rectum
43	chr19:38013400-38015200	Strong transcription	NH-A	brain
44	chr19:38013400-38015800	Strong transcription	Fetal Intestine Large	intestine
45	chr19:38013400-38015800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
46	chr19:38013400-38016000	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr19:38013400-38016000	Strong transcription	Brain Substantia Nigra	brain
48	chr19:38013400-38016000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr19:38013400-38016000	ZNF genes & repeats	Psoas Muscle	Psoas
50	chr19:38013400-38016200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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