Variant report

Variant	rs9559716
Chromosome Location	chr13:110714833-110714834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1373746	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9555665	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9555666	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559717	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9559718	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9559720	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9559721	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9559722	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559723	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559724	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559725	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9559728	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9559729	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110713800-110716200	Enhancers	Liver	Liver
2	chr13:110714000-110715800	Enhancers	HMEC	breast
3	chr13:110714000-110716000	Enhancers	Pancreas	Pancrea
4	chr13:110714000-110716200	Enhancers	Right Ventricle	heart
5	chr13:110714000-110716400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr13:110714200-110715400	Weak transcription	Lung	lung
7	chr13:110714200-110715400	Enhancers	NHEK	skin
8	chr13:110714200-110715800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:110714200-110716200	Enhancers	HSMMtube	muscle
10	chr13:110714400-110715600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:110714400-110715800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:110714400-110716000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:110714400-110716200	Enhancers	Left Ventricle	heart
14	chr13:110714600-110715200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:110714600-110715400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:110714600-110715400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr13:110714600-110715400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:110714600-110716200	Enhancers	Right Atrium	heart
19	chr13:110714600-110716200	Enhancers	HSMM	muscle
20	chr13:110714800-110715000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:110714800-110715200	Enhancers	NHDF-Ad	bronchial
22	chr13:110714800-110715400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:110714800-110715600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr13:110714800-110715800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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