Variant report

Variant	rs9559729
Chromosome Location	chr13:110747421-110747422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110747132..110748037-chr19:48901248..48902099,2	NB4	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1373746	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61438388	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9555665	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9555666	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559716	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9559717	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559718	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559720	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9559721	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9559722	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559723	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559724	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559725	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9559728	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv563095	chr13:110724710-110761521	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv901005	chr13:110733102-110766350	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv515849	chr13:110742197-110761521	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv456111	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456112	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv456113	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv563096	chr13:110742197-110761521	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv563097	chr13:110742197-110766350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv456114	chr13:110742919-110761521	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv563098	chr13:110742919-110761521	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110745200-110747600	Enhancers	Rectal Smooth Muscle	rectum
2	chr13:110745200-110747800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:110745200-110747800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:110745200-110749000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:110745400-110747800	Enhancers	Right Atrium	heart
6	chr13:110745400-110749200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:110745600-110748400	Enhancers	Pancreas	Pancrea
8	chr13:110745800-110748800	Enhancers	HMEC	breast
9	chr13:110746000-110748400	Enhancers	Brain Substantia Nigra	brain
10	chr13:110746000-110749000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:110746400-110747600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:110746400-110747600	Enhancers	Brain Anterior Caudate	brain
13	chr13:110746400-110747600	Enhancers	Fetal Stomach	stomach
14	chr13:110746400-110747600	Enhancers	Placenta Amnion	Placenta Amnion
15	chr13:110746400-110747600	Enhancers	HSMM	muscle
16	chr13:110746400-110747600	Enhancers	NH-A	brain
17	chr13:110746400-110747800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:110746400-110747800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:110746400-110747800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr13:110746400-110748400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr13:110746400-110748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:110746600-110747600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr13:110746600-110747600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr13:110746600-110747600	Enhancers	NHLF	lung
25	chr13:110746600-110747800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:110746600-110748000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr13:110746800-110747600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:110746800-110747600	Enhancers	Fetal Lung	lung
29	chr13:110746800-110747600	Enhancers	Placenta	Placenta
30	chr13:110746800-110747600	Enhancers	Dnd41	blood
31	chr13:110746800-110747600	Flanking Active TSS	Hela-S3	cervix
32	chr13:110746800-110747800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:110746800-110747800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:110747000-110747600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:110747000-110747600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:110747000-110747600	Enhancers	Fetal Muscle Leg	muscle
37	chr13:110747000-110750200	Enhancers	Colon Smooth Muscle	Colon
38	chr13:110747200-110747600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:110747200-110747600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:110747200-110747600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr13:110747200-110747600	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr13:110747200-110747600	Flanking Active TSS	Liver	Liver
43	chr13:110747200-110747600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr13:110747200-110747600	Enhancers	Esophagus	oesophagus
45	chr13:110747200-110747600	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr13:110747200-110747600	Flanking Active TSS	NHEK	skin
47	chr13:110747400-110747600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:110747400-110747600	Enhancers	Brain Hippocampus Middle	brain
49	chr13:110747400-110747600	Enhancers	HSMMtube	muscle
50	chr13:110747400-110747600	Enhancers	NHDF-Ad	bronchial

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