Variant report

Variant	rs9560706
Chromosome Location	chr13:91507969-91507970
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10507985	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11842287	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16944850	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16944857	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17635954	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372571	0.83[AMR][1000 genomes]
rs7981911	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7984080	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7996847	0.82[CEU][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7997511	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9556049	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560701	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9560705	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9560712	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9560715	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1043569	chr13:91016376-91554546	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91498200-91508000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:91506200-91513400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr13:91506800-91508200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:91506800-91509000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:91506800-91510200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:91507000-91510200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:91507400-91509000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:91507800-91511400	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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