Variant report

Variant	rs9562976
Chromosome Location	chr13:51039576-51039577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50664616..50667057-chr13:51038021..51040614,2	K562	blood:
2	chr13:51035921..51038839-chr13:51039096..51041176,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10492410	0.83[ASN][1000 genomes]
rs12428189	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12431131	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1327644	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1359860	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17074358	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35824953	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56023535	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56075206	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60379059	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61962133	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61962135	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61964386	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67618912	0.84[ASN][1000 genomes]
rs719103	0.81[EUR][1000 genomes]
rs7327154	0.81[EUR][1000 genomes]
rs7983762	0.81[EUR][1000 genomes]
rs7996632	0.82[EUR][1000 genomes]
rs8000329	0.82[EUR][1000 genomes]
rs8000921	0.82[EUR][1000 genomes]
rs9316496	0.83[ASN][1000 genomes]
rs9316497	0.84[ASN][1000 genomes]
rs9562963	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9562965	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9562966	0.82[EUR][1000 genomes]
rs9562967	0.82[EUR][1000 genomes]
rs9562968	0.82[EUR][1000 genomes]
rs9562970	0.82[EUR][1000 genomes]
rs9562972	0.85[EUR][1000 genomes]
rs9562973	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9562974	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562975	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9562980	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9562981	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9562982	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568399	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9568402	0.80[EUR][1000 genomes]
rs9568404	0.81[EUR][1000 genomes]
rs9568406	0.81[EUR][1000 genomes]
rs9568408	0.82[EUR][1000 genomes]
rs9568409	0.82[EUR][1000 genomes]
rs9568410	0.86[EUR][1000 genomes]
rs9568412	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568413	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568414	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9568415	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9568417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568418	0.83[ASN][1000 genomes]
rs9568419	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568422	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568423	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568424	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568425	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568427	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568428	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568429	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568430	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568431	0.86[ASN][1000 genomes]
rs9634832	0.82[EUR][1000 genomes]
rs9634834	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv983685	chr13:51038887-51048899	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51030600-51050000	Weak transcription	Fetal Lung	lung
2	chr13:51030800-51040600	Weak transcription	Fetal Stomach	stomach
3	chr13:51033800-51041200	Weak transcription	Right Ventricle	heart
4	chr13:51034800-51040600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:51035000-51042400	Weak transcription	K562	blood
6	chr13:51036000-51041400	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links