Variant report

Variant	rs9562981
Chromosome Location	chr13:51052353-51052354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1028862	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12428087	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12428189	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12431131	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1327644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1359860	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17074346	0.81[EUR][1000 genomes]
rs17074358	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1924372	0.81[EUR][1000 genomes]
rs201789	0.81[CHB][hapmap]
rs471315	0.88[JPT][hapmap]
rs56023535	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56075206	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58633776	0.84[EUR][1000 genomes]
rs60379059	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61962133	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61962135	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61964386	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67618912	0.84[EUR][1000 genomes]
rs719103	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7327154	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7983762	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7996632	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8000329	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8000875	0.81[EUR][1000 genomes]
rs8000921	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9316495	0.91[CEU][hapmap]
rs9316497	0.84[EUR][1000 genomes]
rs9562962	0.81[EUR][1000 genomes]
rs9562964	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9562966	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9562967	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9562968	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9562970	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9562972	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9562973	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9562974	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9562975	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9562976	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9562980	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9562982	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568397	0.81[EUR][1000 genomes]
rs9568398	0.81[EUR][1000 genomes]
rs9568400	0.80[EUR][1000 genomes]
rs9568401	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs9568402	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9568403	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9568404	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568405	0.83[CEU][hapmap];0.81[CHB][hapmap]
rs9568406	1.00[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9568407	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9568408	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9568409	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9568410	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9568412	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9568413	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9568414	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9568415	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9568416	0.83[EUR][1000 genomes]
rs9568417	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568418	0.83[EUR][1000 genomes]
rs9568419	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9568422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568425	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568426	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568427	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568428	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568430	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568431	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568433	0.91[CEU][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634832	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9634834	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1040	chr13:51041591-51090903	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv526482	chr13:51042258-51065836	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51041800-51060600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:51051600-51052400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr13:51051600-51053000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr13:51051800-51057200	Weak transcription	Fetal Heart	heart
5	chr13:51052200-51057400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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