Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10400653	0.82[JPT][hapmap]
rs11617366	0.82[JPT][hapmap]
rs17075018	0.82[JPT][hapmap]
rs7316976	1.00[CHB][hapmap]
rs73186349	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73186350	0.90[EUR][1000 genomes]
rs73186351	0.84[EUR][1000 genomes]
rs73186353	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73186356	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73186357	0.89[AFR][1000 genomes]
rs73186363	0.87[ASN][1000 genomes]
rs9316510	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9316511	0.87[ASN][1000 genomes]
rs9526702	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535529	0.82[JPT][hapmap]
rs9568485	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9568486	0.85[CEU][hapmap]
rs9568487	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568488	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568489	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51465600-51474600	Weak transcription	Aorta	Aorta
2	chr13:51468400-51471400	Enhancers	Thymus	Thymus
3	chr13:51468800-51472000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:51468800-51472200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr13:51468800-51472200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr13:51468800-51472200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:51469000-51483400	Weak transcription	Fetal Lung	lung
8	chr13:51469200-51471800	Weak transcription	GM12878-XiMat	blood
9	chr13:51469200-51472000	Weak transcription	Fetal Heart	heart
10	chr13:51470200-51472400	Enhancers	Dnd41	blood
11	chr13:51470800-51471600	Enhancers	Fetal Thymus	thymus
12	chr13:51470800-51472400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:51471000-51472000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:51471000-51472200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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