Variant report

Variant	rs9563886
Chromosome Location	chr13:61720066-61720067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1399313	0.92[EUR][1000 genomes]
rs1514545	0.92[EUR][1000 genomes]
rs1514547	0.92[EUR][1000 genomes]
rs1514548	0.89[EUR][1000 genomes]
rs2090142	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2175952	0.90[EUR][1000 genomes]
rs2323084	0.92[EUR][1000 genomes]
rs3127262	0.88[EUR][1000 genomes]
rs3127263	0.87[EUR][1000 genomes]
rs7990392	0.90[EUR][1000 genomes]
rs7997231	0.92[EUR][1000 genomes]
rs7998099	0.92[EUR][1000 genomes]
rs9528294	0.88[EUR][1000 genomes]
rs9539047	0.90[EUR][1000 genomes]
rs9539048	0.91[EUR][1000 genomes]
rs9539049	0.92[EUR][1000 genomes]
rs9563882	0.92[EUR][1000 genomes]
rs9563885	0.92[EUR][1000 genomes]
rs9563891	0.81[EUR][1000 genomes]
rs9563892	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61717800-61720600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr13:61718400-61720400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr13:61719000-61720600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:61719200-61720400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:61719800-61720600	ZNF genes & repeats	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links