Variant report
| Variant | rs3127262 |
|---|---|
| Chromosome Location | chr13:61712548-61712549 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1399313 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1514545 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1514547 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1514548 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1606716 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2090142 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2175952 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2323084 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3102172 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3127263 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3127282 | 0.90[JPT][hapmap] |
| rs3127283 | 0.91[JPT][hapmap] |
| rs3127284 | 0.91[JPT][hapmap] |
| rs7990392 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7997231 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7998099 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9528294 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9539047 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9539048 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9539049 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9563882 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9563885 | 0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9563886 | 0.88[EUR][1000 genomes] |
| rs9563891 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9563892 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3444432 | chr13:61665252-61781081 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900243 | chr13:61711163-61799269 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61710600-61716000 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
