Variant report

Variant	rs3102172
Chromosome Location	chr13:61736708-61736709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1399313	0.80[EUR][1000 genomes]
rs1514545	0.80[EUR][1000 genomes]
rs1514547	0.80[EUR][1000 genomes]
rs1606716	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2090142	0.80[EUR][1000 genomes]
rs2175952	0.81[EUR][1000 genomes]
rs2323084	0.80[EUR][1000 genomes]
rs3102197	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3102198	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3102203	0.81[ASN][1000 genomes]
rs3102207	0.82[EUR][1000 genomes]
rs3102215	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102216	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3102217	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102218	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102221	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3127262	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3127263	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3127273	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3127275	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3127282	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs3127283	1.00[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs3127284	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs7990392	0.81[EUR][1000 genomes]
rs7997231	0.80[EUR][1000 genomes]
rs7998099	0.80[EUR][1000 genomes]
rs9539047	0.81[EUR][1000 genomes]
rs9539049	0.80[EUR][1000 genomes]
rs9563882	0.80[EUR][1000 genomes]
rs9563885	0.80[EUR][1000 genomes]
rs9563892	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61735800-61737400	Enhancers	Rectal Smooth Muscle	rectum
2	chr13:61736000-61737200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr13:61736000-61738200	Enhancers	Colon Smooth Muscle	Colon
4	chr13:61736200-61737400	Enhancers	Fetal Heart	heart
5	chr13:61736400-61737200	Enhancers	Stomach Smooth Muscle	stomach

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