Variant report

Variant	rs3102203
Chromosome Location	chr13:61770449-61770450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1384850	0.82[AMR][1000 genomes]
rs1606716	0.80[ASN][1000 genomes]
rs3102172	0.81[ASN][1000 genomes]
rs3102197	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102198	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3102204	0.84[AMR][1000 genomes]
rs3102207	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3102215	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102216	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102217	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102218	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102221	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3127273	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3127275	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3127282	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127283	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127284	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9570503	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61769600-61776200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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