Variant report

Variant	rs3102221
Chromosome Location	chr13:61754315-61754316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1606716	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3102172	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102178	0.84[TSI][hapmap]
rs3102197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3102198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3102203	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102207	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102215	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102216	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3102217	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102218	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3127273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127274	0.87[AMR][1000 genomes]
rs3127275	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3127279	0.85[TSI][hapmap]
rs3127282	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3127283	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3127284	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9570503	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61753000-61755200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr13:61753400-61754800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:61753600-61754400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr13:61753600-61754800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr13:61753600-61755000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:61753600-61755000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:61753600-61755000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:61753600-61755000	Enhancers	Rectal Smooth Muscle	rectum
9	chr13:61753800-61754400	Weak transcription	Fetal Stomach	stomach
10	chr13:61753800-61754400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:61753800-61755000	Enhancers	Fetal Kidney	kidney
12	chr13:61753800-61759200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr13:61754000-61754400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr13:61754000-61754400	Flanking Active TSS	Colon Smooth Muscle	Colon
15	chr13:61754000-61754400	Active TSS	Stomach Smooth Muscle	stomach
16	chr13:61754000-61755000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:61754000-61755000	Enhancers	Aorta	Aorta
18	chr13:61754200-61755400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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