Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1384850	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102177	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102178	0.80[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3102197	0.87[AMR][1000 genomes]
rs3102198	0.87[AMR][1000 genomes]
rs3102201	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3102204	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102205	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3102206	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3102215	0.86[AMR][1000 genomes]
rs3102216	0.86[AMR][1000 genomes]
rs3102217	0.86[AMR][1000 genomes]
rs3102218	0.86[AMR][1000 genomes]
rs3102221	0.87[AMR][1000 genomes]
rs3127273	0.87[AMR][1000 genomes]
rs3127275	0.87[AMR][1000 genomes]
rs3127278	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3127279	0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3127282	0.85[CEU][hapmap]
rs3127283	0.86[CEU][hapmap]
rs3127284	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61753800-61759200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:61755000-61758800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:61756600-61760800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:61756800-61758600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:61756800-61760400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr13:61757000-61759000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:61757000-61759800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:61757000-61760600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:61757200-61758600	Enhancers	HUES6 Cell Line	embryonic stem cell

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