Variant report
| Variant | rs3102201 |
|---|---|
| Chromosome Location | chr13:61762634-61762635 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1384850 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3102177 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3102178 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3102199 | 0.86[AFR][1000 genomes] |
| rs3102204 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3102205 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3102206 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3102210 | 0.85[EUR][1000 genomes] |
| rs3102212 | 0.95[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3102213 | 0.88[AFR][1000 genomes] |
| rs3102214 | 0.88[AFR][1000 genomes] |
| rs3102219 | 0.86[AFR][1000 genomes] |
| rs3102220 | 0.88[AFR][1000 genomes] |
| rs3102222 | 0.86[AFR][1000 genomes] |
| rs3127270 | 0.86[AFR][1000 genomes] |
| rs3127271 | 0.88[AFR][1000 genomes] |
| rs3127272 | 0.93[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3127274 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3127278 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3127279 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832627 | chr13:61642811-61829217 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3444432 | chr13:61665252-61781081 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900243 | chr13:61711163-61799269 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:61762400-61762800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
