Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr13:61776171-61776557	H1-hESC	embryonic stem cell:	n/a	n/a
2	SIN3AK20	chr13:61776216-61776537	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr13:61776180-61776571	H1-hESC	embryonic stem cell:	n/a	n/a
4	EGR1	chr13:61776175-61776541	H1-hESC	embryonic stem cell:	n/a	n/a
5	SP1	chr13:61776138-61776574	H1-hESC	embryonic stem cell:	n/a	chr13:61776526-61776535
6	JUND	chr13:61776167-61776599	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3A	chr13:61776158-61776564	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr13:61776158-61776624	H1-hESC	embryonic stem cell:	n/a	n/a
9	SP1	chr13:61776167-61776509	H1-hESC	embryonic stem cell:	n/a	n/a
10	YY1	chr13:61776249-61776570	H1-hESC	embryonic stem cell:	n/a	n/a
11	EGR1	chr13:61776156-61776499	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr13:61776209-61776573	H1-hESC	embryonic stem cell:	n/a	n/a
13	BCL11A	chr13:61776231-61776484	H1-hESC	embryonic stem cell:	n/a	n/a
14	SIN3AK20	chr13:61776183-61776513	H1-hESC	embryonic stem cell:	n/a	n/a
15	TCF12	chr13:61776135-61776670	H1-hESC	embryonic stem cell:	n/a	n/a
16	EP300	chr13:61776221-61776564	H1-hESC	embryonic stem cell:	n/a	n/a
17	TCF12	chr13:61776150-61776574	H1-hESC	embryonic stem cell:	n/a	n/a
18	ZNF274	chr13:61776200-61776552	H1-hESC	embryonic stem cell:	n/a	n/a
19	NANOG	chr13:61776251-61776530	H1-hESC	embryonic stem cell:	n/a	chr13:61776369-61776378
20	HDAC2	chr13:61776224-61776560	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
MIR3169	TF binding region

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1384850	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3102201	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3102204	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102205	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102206	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3127272	0.84[EUR][1000 genomes]
rs3127274	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3127279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3127281	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs3127282	0.86[CHB][hapmap]
rs3127283	0.87[CHB][hapmap]
rs3127284	0.87[CHB][hapmap]
rs3127285	0.81[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61776000-61776800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:61776200-61776400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr13:61776200-61776400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
4	chr13:61776200-61776600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr13:61776200-61777000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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