Variant report

Variant	rs3127272
Chromosome Location	chr13:61756728-61756729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1384850	0.85[EUR][1000 genomes]
rs3102177	0.84[EUR][1000 genomes]
rs3102178	0.85[EUR][1000 genomes]
rs3102199	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3102201	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3102204	0.86[EUR][1000 genomes]
rs3102205	0.84[EUR][1000 genomes]
rs3102206	0.84[EUR][1000 genomes]
rs3102210	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3102212	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3102213	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3102214	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3102219	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3102220	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3102222	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3127270	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3127271	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3127278	0.84[EUR][1000 genomes]
rs3127279	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61753800-61759200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:61754800-61757200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:61755000-61756800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:61755000-61757000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:61755000-61757000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:61755000-61758800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:61755200-61756800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:61755400-61757000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:61756600-61760800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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