Variant report

Variant	rs3102212
Chromosome Location	chr13:61745606-61745607
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3102199	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3102201	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3102204	0.80[EUR][1000 genomes]
rs3102209	0.81[AMR][1000 genomes]
rs3102210	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3102211	0.81[AMR][1000 genomes]
rs3102213	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3102214	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3102219	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3102220	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3102222	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3127270	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3127271	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3127272	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61743400-61749800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:61744400-61746000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:61744800-61746000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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