Variant report
| Variant | rs9565979 |
|---|---|
| Chromosome Location | chr13:85492867-85492868 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:85491602..85495231-chr13:86366745..86369827,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12427704 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12429824 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4460968 | 0.89[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4911041 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs58281864 | 0.94[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72632605 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9531676 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9531679 | 0.93[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9546950 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9546951 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9546959 | 0.93[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9546964 | 0.93[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9547010 | 0.89[AMR][1000 genomes] |
| rs9565984 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9565999 | 0.80[AMR][1000 genomes] |
| rs9575682 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9575683 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9575684 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9575685 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9575686 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9575699 | 0.89[AMR][1000 genomes] |
| rs9635061 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv900702 | chr13:85276978-85605946 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv900703 | chr13:85337948-85582307 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv832667 | chr13:85422787-85557377 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1041062 | chr13:85457391-85531111 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv900704 | chr13:85478855-85651739 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv562562 | chr13:85482828-85538474 | Flanking Active TSS Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:85491600-85493000 | Enhancers | Fetal Kidney | kidney |
| 2 | chr13:85492800-85497400 | Weak transcription | Fetal Lung | lung |
