Variant report

Variant	rs9575699
Chromosome Location	chr13:85548594-85548595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1119661	0.84[ASN][1000 genomes]
rs12427704	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12429824	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1500674	0.86[ASN][1000 genomes]
rs1604180	0.84[ASN][1000 genomes]
rs1604185	0.86[ASN][1000 genomes]
rs1604186	0.86[ASN][1000 genomes]
rs2225842	0.84[ASN][1000 genomes]
rs2340633	0.86[ASN][1000 genomes]
rs2485232	0.86[ASN][1000 genomes]
rs2485241	0.84[ASN][1000 genomes]
rs2485243	0.84[ASN][1000 genomes]
rs2485245	0.82[ASN][1000 genomes]
rs2485247	0.82[ASN][1000 genomes]
rs2496747	0.86[ASN][1000 genomes]
rs2496752	0.86[ASN][1000 genomes]
rs4460968	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4911041	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58281864	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72632605	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9531676	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9531679	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9531699	0.83[ASN][1000 genomes]
rs9546950	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9546951	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9546959	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9546964	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565979	0.89[AMR][1000 genomes]
rs9565984	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9565999	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9575682	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9575683	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9575684	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9575685	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9575686	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9635061	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832667	chr13:85422787-85557377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900704	chr13:85478855-85651739	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471161	chr13:85497445-85628777	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv430595	chr13:85499399-85566699	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv916866	chr13:85505771-86241562	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv900705	chr13:85505994-85598986	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv900706	chr13:85512143-85555284	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv900707	chr13:85514351-85564579	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv900708	chr13:85514351-85578989	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv900709	chr13:85514351-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv900710	chr13:85514351-85609277	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv900711	chr13:85514351-85614474	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv900712	chr13:85514351-85709130	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1050105	chr13:85524968-86218429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv541857	chr13:85524968-86218429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv562563	chr13:85528032-85551906	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv562564	chr13:85528032-85566328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv900713	chr13:85528032-85578989	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv900714	chr13:85528032-85586719	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
23	nsv900715	chr13:85528032-85611743	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
24	nsv900716	chr13:85528032-85614474	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
25	nsv562565	chr13:85532651-85586719	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
26	nsv456047	chr13:85543153-85557107	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
27	nsv562566	chr13:85543153-85557107	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv900717	chr13:85543312-85582307	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
29	nsv821673	chr13:85548446-85969019	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv442323	chr13:85548479-85555971	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv1796309	chr13:85548479-85555973	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	esv2757545	chr13:85548594-85554591	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv2759955	chr13:85548594-85554591	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85547800-85548600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr13:85547800-85548600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:85547800-85548600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:85547800-85549400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:85548000-85548600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:85548000-85548600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:85548200-85548600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:85548400-85552400	Weak transcription	Fetal Kidney	kidney

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