Variant report

Variant	rs9566460
Chromosome Location	chr13:40149810-40149811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58418761	0.80[EUR][1000 genomes]
rs58918104	0.80[EUR][1000 genomes]
rs72623305	0.80[EUR][1000 genomes]
rs7337970	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9315708	0.94[TSI][hapmap]
rs9566456	1.00[ASW][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs9576847	1.00[GIH][hapmap];0.87[TSI][hapmap]
rs9576849	1.00[GIH][hapmap];0.87[TSI][hapmap]
rs9576864	0.80[EUR][1000 genomes]
rs9576867	1.00[GIH][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs9576868	0.93[CHB][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40129000-40152800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:40138800-40152800	Weak transcription	Aorta	Aorta
3	chr13:40139200-40158000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:40140000-40169400	Weak transcription	Fetal Stomach	stomach
5	chr13:40140400-40157800	Weak transcription	Adipose Nuclei	Adipose
6	chr13:40140800-40152800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr13:40140800-40165400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:40142000-40156200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:40142000-40156200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:40142000-40169400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:40142000-40169400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:40142200-40150000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:40142200-40152600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr13:40143000-40158200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:40143200-40157800	Weak transcription	NHDF-Ad	bronchial
16	chr13:40143200-40161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:40143200-40170800	Weak transcription	Osteobl	bone
18	chr13:40145600-40153200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr13:40146000-40152800	Weak transcription	NHLF	lung
20	chr13:40146000-40155400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:40146000-40171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:40146200-40151000	Weak transcription	Ovary	ovary
23	chr13:40146200-40151800	Weak transcription	Lung	lung
24	chr13:40146200-40161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:40146400-40155200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:40147000-40153200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr13:40147000-40162200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:40149000-40151800	Weak transcription	Fetal Lung	lung
29	chr13:40149200-40150200	Weak transcription	NHEK	skin
30	chr13:40149200-40152200	Enhancers	Fetal Heart	heart
31	chr13:40149200-40153000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:40149400-40152600	Weak transcription	Right Ventricle	heart
33	chr13:40149600-40150000	Enhancers	Fetal Muscle Trunk	muscle
34	chr13:40149600-40150200	Flanking Active TSS	HSMMtube	muscle
35	chr13:40149600-40150400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr13:40149600-40150400	Flanking Active TSS	HSMM	muscle
37	chr13:40149800-40150000	Enhancers	H9 Cell Line	embryonic stem cell
38	chr13:40149800-40150000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr13:40149800-40150000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:40149800-40150000	Flanking Active TSS	Fetal Muscle Leg	muscle
41	chr13:40149800-40150000	Enhancers	Left Ventricle	heart
42	chr13:40149800-40150000	Enhancers	Psoas Muscle	Psoas
43	chr13:40149800-40150200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr13:40149800-40150200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr13:40149800-40150200	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr13:40149800-40150200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr13:40149800-40150200	Flanking Active TSS	Right Atrium	heart
48	chr13:40149800-40150400	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr13:40149800-40150400	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr13:40149800-40150400	Enhancers	GM12878-XiMat	blood

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