Variant report

Variant	rs9567956
Chromosome Location	chr13:48511824-48511825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617143	1.00[CHB][hapmap]
rs11617894	0.85[EUR][1000 genomes]
rs12561235	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13243	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025703	0.86[EUR][1000 genomes]
rs2094196	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4331249	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4477588	0.95[EUR][1000 genomes]
rs56097393	0.86[EUR][1000 genomes]
rs56385117	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7326861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs7331746	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7335662	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs7335869	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7337521	1.00[CHB][hapmap]
rs7339238	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7981492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7981902	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs7989765	0.90[ASN][1000 genomes]
rs7993196	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9534872	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562772	0.90[ASN][1000 genomes]
rs9562780	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562781	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562784	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562785	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9562786	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9562790	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9562791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9562794	0.86[EUR][1000 genomes]
rs9562795	0.84[EUR][1000 genomes]
rs9562797	0.84[EUR][1000 genomes]
rs9562798	0.83[EUR][1000 genomes]
rs9567944	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9567945	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9567946	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9567957	0.88[EUR][1000 genomes]
rs9567966	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9567967	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9567970	0.86[EUR][1000 genomes]
rs9567971	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs9567975	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs9567977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs9567978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs9567982	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs9567990	1.00[CHB][hapmap]
rs9567992	1.00[CHB][hapmap]
rs9634678	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9634811	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48501000-48531200	Weak transcription	Spleen	Spleen
2	chr13:48502000-48530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:48502600-48513600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:48503600-48512400	Weak transcription	Aorta	Aorta
5	chr13:48503800-48513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:48503800-48516800	Weak transcription	NHDF-Ad	bronchial
7	chr13:48504000-48513400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:48506000-48531400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:48506800-48522600	Weak transcription	Fetal Brain Male	brain
10	chr13:48507200-48524000	Weak transcription	Lung	lung
11	chr13:48507200-48548800	Weak transcription	Stomach Mucosa	stomach
12	chr13:48507400-48512200	Weak transcription	Adipose Nuclei	Adipose
13	chr13:48507600-48513400	Weak transcription	Fetal Lung	lung
14	chr13:48507800-48513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr13:48507800-48513600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr13:48507800-48515200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr13:48507800-48515200	Weak transcription	Osteobl	bone
18	chr13:48507800-48530600	Weak transcription	Brain Angular Gyrus	brain
19	chr13:48508000-48514000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr13:48508000-48514200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:48508000-48514200	Weak transcription	Fetal Stomach	stomach
22	chr13:48508000-48515200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr13:48508000-48515200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr13:48508000-48515400	Weak transcription	Fetal Kidney	kidney
25	chr13:48508000-48516200	Weak transcription	Brain Substantia Nigra	brain
26	chr13:48508000-48522400	Weak transcription	GM12878-XiMat	blood
27	chr13:48508000-48531400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr13:48508200-48512400	Weak transcription	Fetal Muscle Leg	muscle
29	chr13:48508200-48512400	Weak transcription	Thymus	Thymus
30	chr13:48508200-48515400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr13:48508200-48515800	Weak transcription	Psoas Muscle	Psoas
32	chr13:48508200-48520000	Weak transcription	HepG2	liver
33	chr13:48508200-48529600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr13:48508400-48512400	Weak transcription	Pancreas	Pancrea
35	chr13:48508400-48513200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr13:48508400-48513600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr13:48508400-48513600	Weak transcription	HMEC	breast
38	chr13:48508400-48515200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr13:48508600-48512200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr13:48508600-48512400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:48508600-48513800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:48508600-48515400	Weak transcription	Brain Hippocampus Middle	brain
43	chr13:48508600-48530800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr13:48508800-48513400	Weak transcription	Brain Anterior Caudate	brain
45	chr13:48508800-48514200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr13:48508800-48515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr13:48508800-48522000	Weak transcription	NH-A	brain
48	chr13:48509000-48513800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:48509000-48515200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr13:48509000-48530800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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