Variant report

Variant	rs9562772
Chromosome Location	chr13:48446136-48446137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10397	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[TSI][hapmap];0.90[ASN][1000 genomes]
rs13243	0.90[ASN][1000 genomes]
rs2094196	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4331249	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942711	0.91[EUR][1000 genomes]
rs56385117	0.90[ASN][1000 genomes]
rs7324919	0.90[ASN][1000 genomes]
rs7326861	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs7331746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335662	1.00[CHB][hapmap]
rs7335869	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7339238	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7981492	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs7981902	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7984527	0.84[EUR][1000 genomes]
rs7989765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993196	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534872	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562780	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562781	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562784	0.90[ASN][1000 genomes]
rs9562785	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs9562791	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs9567939	0.92[EUR][1000 genomes]
rs9567944	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567945	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567946	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567956	0.90[ASN][1000 genomes]
rs9567971	1.00[CHB][hapmap]
rs9567975	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs9567977	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs9567978	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs9567982	1.00[CHB][hapmap]
rs9634811	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9562772	SUCLA2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48444200-48448000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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