Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10397	0.84[CEU][hapmap]
rs1160069	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12429137	0.81[JPT][hapmap]
rs4331249	0.90[EUR][1000 genomes]
rs4941615	0.99[ASN][1000 genomes]
rs4941619	0.81[JPT][hapmap]
rs4942711	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61562431	0.84[ASN][1000 genomes]
rs6561408	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6561429	0.81[JPT][hapmap]
rs7326861	0.85[CEU][hapmap]
rs7331746	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7335869	0.90[EUR][1000 genomes]
rs7339238	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7981492	0.84[CEU][hapmap]
rs7981902	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7989765	0.85[EUR][1000 genomes]
rs7993196	0.91[EUR][1000 genomes]
rs7999360	0.81[JPT][hapmap]
rs9316338	0.84[ASN][1000 genomes]
rs9534872	0.90[EUR][1000 genomes]
rs9562772	0.84[EUR][1000 genomes]
rs9562773	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9562780	0.90[EUR][1000 genomes]
rs9562781	0.90[EUR][1000 genomes]
rs9562791	0.85[CEU][hapmap]
rs9567939	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9567942	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9567944	0.91[EUR][1000 genomes]
rs9567945	0.90[EUR][1000 genomes]
rs9567946	0.90[EUR][1000 genomes]
rs9567975	0.92[CEU][hapmap]
rs9567977	0.85[CEU][hapmap]
rs9567978	0.85[CEU][hapmap]
rs9634811	0.91[EUR][1000 genomes]
rs970650	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs970651	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48449000-48464200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:48451000-48480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:48453800-48471600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:48454800-48464400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:48456600-48460600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:48456600-48460600	Weak transcription	Pancreas	Pancrea
7	chr13:48457200-48478000	Weak transcription	Adipose Nuclei	Adipose

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