Variant report
| Variant | rs9316338 |
|---|---|
| Chromosome Location | chr13:48449708-48449709 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1041070 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10870820 | 0.88[ASN][1000 genomes] |
| rs1326136 | 0.81[CHB][hapmap] |
| rs1326140 | 0.81[CHB][hapmap] |
| rs1536301 | 0.81[CHB][hapmap] |
| rs2094194 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2296574 | 0.81[CHB][hapmap] |
| rs4941615 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4942727 | 0.81[CHB][hapmap] |
| rs6561429 | 0.81[CHB][hapmap] |
| rs7318770 | 0.88[CHB][hapmap] |
| rs7336972 | 0.81[ASN][1000 genomes] |
| rs765809 | 0.81[CHB][hapmap] |
| rs7984527 | 0.84[ASN][1000 genomes] |
| rs7989231 | 0.88[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs7996580 | 0.81[CHB][hapmap] |
| rs7997802 | 0.87[CHB][hapmap] |
| rs7999360 | 0.81[CHB][hapmap] |
| rs9534889 | 0.81[CHB][hapmap] |
| rs9562773 | 0.99[ASN][1000 genomes] |
| rs9567942 | 0.99[ASN][1000 genomes] |
| rs9567954 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9567955 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9567958 | 0.88[CHB][hapmap] |
| rs9567980 | 0.81[CHB][hapmap] |
| rs9567986 | 0.81[CHB][hapmap] |
| rs9595815 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9595825 | 0.81[CHB][hapmap] |
| rs970650 | 0.99[ASN][1000 genomes] |
| rs970651 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv933980 | chr13:48431000-48557419 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9316338 | SUCLA2 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:48449000-48464200 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
