Variant report

Variant	rs7336972
Chromosome Location	chr13:48512530-48512531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1041070	0.97[ASN][1000 genomes]
rs11148100	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11618397	0.86[ASN][1000 genomes]
rs1185727	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1326135	0.81[ASN][1000 genomes]
rs1326136	0.83[ASN][1000 genomes]
rs1326138	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1326139	0.89[ASN][1000 genomes]
rs1326140	0.89[ASN][1000 genomes]
rs1544078	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1853929	0.89[ASN][1000 genomes]
rs1886975	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1926089	0.86[ASN][1000 genomes]
rs1967794	0.85[EUR][1000 genomes]
rs2031590	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2094194	0.96[ASN][1000 genomes]
rs2148243	0.83[ASN][1000 genomes]
rs2148244	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2148245	0.86[ASN][1000 genomes]
rs2182376	0.82[ASN][1000 genomes]
rs2296574	0.81[ASN][1000 genomes]
rs2406693	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2406697	0.82[ASN][1000 genomes]
rs4245347	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4447314	0.82[ASN][1000 genomes]
rs4522322	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4941621	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4942725	0.84[ASN][1000 genomes]
rs4942726	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4942727	0.82[ASN][1000 genomes]
rs4942728	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4942729	0.83[ASN][1000 genomes]
rs4942730	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4942735	0.81[ASN][1000 genomes]
rs6561415	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6561417	0.86[ASN][1000 genomes]
rs6561419	0.83[ASN][1000 genomes]
rs6561420	0.83[ASN][1000 genomes]
rs6561424	0.81[ASN][1000 genomes]
rs6561427	0.80[ASN][1000 genomes]
rs6561430	0.81[ASN][1000 genomes]
rs6561431	0.80[ASN][1000 genomes]
rs6561432	0.80[ASN][1000 genomes]
rs718010	0.86[ASN][1000 genomes]
rs7318770	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7319245	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7320366	0.84[ASN][1000 genomes]
rs7320461	0.86[ASN][1000 genomes]
rs7320759	0.86[ASN][1000 genomes]
rs7322515	0.83[ASN][1000 genomes]
rs7325189	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7325437	0.80[ASN][1000 genomes]
rs7326889	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7326984	0.83[ASN][1000 genomes]
rs7327730	0.82[ASN][1000 genomes]
rs7328525	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7328537	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7330130	0.80[ASN][1000 genomes]
rs7330913	0.81[ASN][1000 genomes]
rs7331285	0.80[ASN][1000 genomes]
rs7332304	0.80[ASN][1000 genomes]
rs7333821	0.86[ASN][1000 genomes]
rs7334207	0.86[ASN][1000 genomes]
rs7335788	0.86[ASN][1000 genomes]
rs7337004	0.80[ASN][1000 genomes]
rs7337744	0.81[ASN][1000 genomes]
rs7338125	0.86[ASN][1000 genomes]
rs7338373	0.80[ASN][1000 genomes]
rs7338894	0.84[ASN][1000 genomes]
rs765809	0.86[ASN][1000 genomes]
rs7981260	0.84[AFR][1000 genomes]
rs7985357	0.90[ASN][1000 genomes]
rs7989231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990244	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7990266	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7990505	0.83[ASN][1000 genomes]
rs7994359	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7996580	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7997802	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7998116	0.82[ASN][1000 genomes]
rs7998260	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7998497	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7998998	0.82[ASN][1000 genomes]
rs8000164	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001432	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9316338	0.81[ASN][1000 genomes]
rs9316339	0.84[ASN][1000 genomes]
rs9316343	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9316344	0.82[ASN][1000 genomes]
rs9526417	0.89[ASN][1000 genomes]
rs9526422	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9526423	0.86[ASN][1000 genomes]
rs9526426	0.83[ASN][1000 genomes]
rs9526429	0.81[ASN][1000 genomes]
rs9526430	0.82[ASN][1000 genomes]
rs9526433	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526434	0.80[ASN][1000 genomes]
rs9534876	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9534877	0.86[ASN][1000 genomes]
rs9534878	0.86[ASN][1000 genomes]
rs9534879	0.86[ASN][1000 genomes]
rs9534880	0.86[ASN][1000 genomes]
rs9534882	0.85[ASN][1000 genomes]
rs9534885	0.86[ASN][1000 genomes]
rs9534889	0.83[ASN][1000 genomes]
rs9534892	0.81[ASN][1000 genomes]
rs9534896	0.80[ASN][1000 genomes]
rs9534898	0.81[ASN][1000 genomes]
rs9534901	0.81[ASN][1000 genomes]
rs9534903	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9534904	0.82[ASN][1000 genomes]
rs9534905	0.82[ASN][1000 genomes]
rs9534906	0.82[ASN][1000 genomes]
rs9534907	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9534908	0.82[ASN][1000 genomes]
rs9534909	0.80[ASN][1000 genomes]
rs9534912	0.82[ASN][1000 genomes]
rs9534913	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9534923	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9534926	0.82[ASN][1000 genomes]
rs9562773	0.82[ASN][1000 genomes]
rs9562787	0.86[ASN][1000 genomes]
rs9567942	0.82[ASN][1000 genomes]
rs9567954	0.97[ASN][1000 genomes]
rs9567955	0.97[ASN][1000 genomes]
rs9567958	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9567959	0.86[ASN][1000 genomes]
rs9567960	0.86[ASN][1000 genomes]
rs9567963	0.86[ASN][1000 genomes]
rs9567964	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9567972	0.81[ASN][1000 genomes]
rs9567976	0.82[ASN][1000 genomes]
rs9567980	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9567986	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9595815	0.96[ASN][1000 genomes]
rs9595825	0.86[ASN][1000 genomes]
rs970650	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7336972	SUCLA2	cis	Muscle Skeletal	GTEx
rs7336972	SUCLA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48501000-48531200	Weak transcription	Spleen	Spleen
2	chr13:48502000-48530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:48502600-48513600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:48503800-48513200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:48503800-48516800	Weak transcription	NHDF-Ad	bronchial
6	chr13:48504000-48513400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:48506000-48531400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr13:48506800-48522600	Weak transcription	Fetal Brain Male	brain
9	chr13:48507200-48524000	Weak transcription	Lung	lung
10	chr13:48507200-48548800	Weak transcription	Stomach Mucosa	stomach
11	chr13:48507600-48513400	Weak transcription	Fetal Lung	lung
12	chr13:48507800-48513600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:48507800-48513600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr13:48507800-48515200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr13:48507800-48515200	Weak transcription	Osteobl	bone
16	chr13:48507800-48530600	Weak transcription	Brain Angular Gyrus	brain
17	chr13:48508000-48514000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:48508000-48514200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:48508000-48514200	Weak transcription	Fetal Stomach	stomach
20	chr13:48508000-48515200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr13:48508000-48515200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr13:48508000-48515400	Weak transcription	Fetal Kidney	kidney
23	chr13:48508000-48516200	Weak transcription	Brain Substantia Nigra	brain
24	chr13:48508000-48522400	Weak transcription	GM12878-XiMat	blood
25	chr13:48508000-48531400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:48508200-48515400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:48508200-48515800	Weak transcription	Psoas Muscle	Psoas
28	chr13:48508200-48520000	Weak transcription	HepG2	liver
29	chr13:48508200-48529600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr13:48508400-48513200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:48508400-48513600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr13:48508400-48513600	Weak transcription	HMEC	breast
33	chr13:48508400-48515200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr13:48508600-48513800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr13:48508600-48515400	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:48508600-48530800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr13:48508800-48513400	Weak transcription	Brain Anterior Caudate	brain
38	chr13:48508800-48514200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr13:48508800-48515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr13:48508800-48522000	Weak transcription	NH-A	brain
41	chr13:48509000-48513800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:48509000-48515200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr13:48509000-48530800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr13:48509200-48514000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr13:48509200-48514200	Weak transcription	HSMMtube	muscle
46	chr13:48509200-48528400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr13:48509400-48513600	Weak transcription	Primary B cells from cord blood	blood
48	chr13:48509400-48515200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr13:48510000-48512800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr13:48510000-48513200	Weak transcription	Fetal Brain Female	brain

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