Variant report

Variant	rs9595815
Chromosome Location	chr13:48502068-48502069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48501618..48503669-chr13:48506224..48510200,3	K562	blood:

Variant related genes	Relation type
ENSG00000260388	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs1041070	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11148100	0.89[ASN][1000 genomes]
rs11618397	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1185727	0.84[ASN][1000 genomes]
rs12428259	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs12429137	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1326135	0.81[ASN][1000 genomes]
rs1326136	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1326138	0.85[ASN][1000 genomes]
rs1326139	0.85[ASN][1000 genomes]
rs1326140	0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1536301	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs1544078	0.94[ASN][1000 genomes]
rs17071168	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1853929	0.85[ASN][1000 genomes]
rs1886975	0.90[ASN][1000 genomes]
rs1926089	0.82[ASN][1000 genomes]
rs2031590	0.88[ASN][1000 genomes]
rs2094194	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148243	0.82[ASN][1000 genomes]
rs2148244	0.89[ASN][1000 genomes]
rs2148245	0.82[ASN][1000 genomes]
rs2182376	0.82[ASN][1000 genomes]
rs2296574	0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2406690	0.81[YRI][hapmap]
rs2406693	0.90[ASN][1000 genomes]
rs2406697	0.82[ASN][1000 genomes]
rs4245347	0.89[ASN][1000 genomes]
rs4447314	0.82[ASN][1000 genomes]
rs4522322	0.88[ASN][1000 genomes]
rs4941615	0.80[EUR][1000 genomes]
rs4941619	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4941621	0.88[ASN][1000 genomes]
rs4942725	0.81[ASN][1000 genomes]
rs4942726	0.86[ASN][1000 genomes]
rs4942727	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4942728	0.89[ASN][1000 genomes]
rs4942729	0.82[ASN][1000 genomes]
rs4942730	0.82[ASN][1000 genomes]
rs4942735	0.81[ASN][1000 genomes]
rs6561415	0.85[ASN][1000 genomes]
rs6561417	0.82[ASN][1000 genomes]
rs6561419	0.82[ASN][1000 genomes]
rs6561420	0.82[ASN][1000 genomes]
rs6561424	0.81[ASN][1000 genomes]
rs6561427	0.80[ASN][1000 genomes]
rs6561429	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs6561430	0.81[ASN][1000 genomes]
rs6561431	0.80[ASN][1000 genomes]
rs6561432	0.80[ASN][1000 genomes]
rs718010	0.82[ASN][1000 genomes]
rs7318770	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7319245	0.88[ASN][1000 genomes]
rs7320366	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7320461	0.82[ASN][1000 genomes]
rs7320759	0.82[ASN][1000 genomes]
rs7322515	0.82[ASN][1000 genomes]
rs7325189	0.86[ASN][1000 genomes]
rs7325437	0.80[ASN][1000 genomes]
rs7326889	0.90[ASN][1000 genomes]
rs7326984	0.82[ASN][1000 genomes]
rs7327730	0.82[ASN][1000 genomes]
rs7328525	0.88[ASN][1000 genomes]
rs7328537	0.88[ASN][1000 genomes]
rs7330130	0.80[ASN][1000 genomes]
rs7330913	0.81[ASN][1000 genomes]
rs7331285	0.80[ASN][1000 genomes]
rs7332304	0.80[ASN][1000 genomes]
rs7333821	0.82[ASN][1000 genomes]
rs7334207	0.82[ASN][1000 genomes]
rs7335788	0.82[ASN][1000 genomes]
rs7336972	0.96[ASN][1000 genomes]
rs7337004	0.80[ASN][1000 genomes]
rs7337744	0.81[ASN][1000 genomes]
rs7338125	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7338373	0.80[ASN][1000 genomes]
rs7338894	0.81[ASN][1000 genomes]
rs765809	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7985357	0.88[ASN][1000 genomes]
rs7989231	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7990244	0.88[ASN][1000 genomes]
rs7990266	0.88[ASN][1000 genomes]
rs7990505	0.82[ASN][1000 genomes]
rs7994359	0.93[ASN][1000 genomes]
rs7996580	0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7997802	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7998116	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7998260	0.88[ASN][1000 genomes]
rs7998497	0.88[ASN][1000 genomes]
rs7998998	0.82[ASN][1000 genomes]
rs7999360	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs8000164	0.88[ASN][1000 genomes]
rs8001432	0.88[ASN][1000 genomes]
rs9316338	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9316339	0.86[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs9316343	0.88[ASN][1000 genomes]
rs9316344	0.82[ASN][1000 genomes]
rs9526417	0.86[ASN][1000 genomes]
rs9526422	0.89[ASN][1000 genomes]
rs9526423	0.82[ASN][1000 genomes]
rs9526426	0.82[ASN][1000 genomes]
rs9526429	0.86[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9526430	0.82[ASN][1000 genomes]
rs9526433	0.88[ASN][1000 genomes]
rs9526434	0.80[ASN][1000 genomes]
rs9534876	0.82[CHB][hapmap];0.94[ASN][1000 genomes]
rs9534877	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9534878	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9534879	0.82[ASN][1000 genomes]
rs9534880	0.82[ASN][1000 genomes]
rs9534881	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs9534882	0.82[ASN][1000 genomes]
rs9534885	0.82[ASN][1000 genomes]
rs9534889	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9534892	0.81[ASN][1000 genomes]
rs9534898	0.81[ASN][1000 genomes]
rs9534901	0.81[ASN][1000 genomes]
rs9534903	0.88[ASN][1000 genomes]
rs9534904	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9534905	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9534906	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9534907	0.88[ASN][1000 genomes]
rs9534908	0.82[ASN][1000 genomes]
rs9534912	0.82[ASN][1000 genomes]
rs9534913	0.88[ASN][1000 genomes]
rs9534923	0.86[ASN][1000 genomes]
rs9534926	0.82[ASN][1000 genomes]
rs9534929	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs9562773	0.85[ASN][1000 genomes]
rs9562787	0.82[ASN][1000 genomes]
rs9567942	0.85[ASN][1000 genomes]
rs9567954	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9567955	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9567958	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs9567959	0.82[ASN][1000 genomes]
rs9567960	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9567963	0.82[ASN][1000 genomes]
rs9567964	0.89[ASN][1000 genomes]
rs9567972	0.81[ASN][1000 genomes]
rs9567976	0.82[ASN][1000 genomes]
rs9567980	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9567986	0.93[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs9595825	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs970650	0.85[ASN][1000 genomes]
rs970651	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1803690	chr13:48470681-48508091	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9595815	SUCLA2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48477000-48506400	Weak transcription	Psoas Muscle	Psoas
2	chr13:48492200-48510800	Weak transcription	Left Ventricle	heart
3	chr13:48495200-48506800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:48496600-48506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:48501000-48531200	Weak transcription	Spleen	Spleen
6	chr13:48502000-48530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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