The 2.0 version of rSNPBase

Variant report

Variant rs2406693
Chromosome Location chr13:48530637-48530638
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48501000-48531200 Weak transcription Spleen Spleen
2 chr13:48502000-48530800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr13:48506000-48531400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr13:48507200-48548800 Weak transcription Stomach Mucosa stomach
5 chr13:48508000-48531400 Weak transcription Rectal Smooth Muscle rectum
6 chr13:48508600-48530800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr13:48509000-48530800 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr13:48511000-48536600 Weak transcription Esophagus oesophagus
9 chr13:48511800-48531200 Weak transcription HUVEC blood vessel
10 chr13:48512200-48530800 Weak transcription Colonic Mucosa Colon
11 chr13:48512200-48531200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr13:48512600-48530800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr13:48512600-48531400 Weak transcription Aorta Aorta
14 chr13:48512600-48537600 Weak transcription Hela-S3 cervix
15 chr13:48512800-48531200 Weak transcription Gastric stomach
16 chr13:48512800-48533800 Weak transcription NHLF lung
17 chr13:48513000-48531000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr13:48514400-48574000 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr13:48516200-48531200 Weak transcription Brain Inferior Temporal Lobe brain
20 chr13:48519600-48531200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
21 chr13:48519600-48533800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr13:48523000-48541600 Weak transcription Psoas Muscle Psoas
23 chr13:48523000-48542600 Weak transcription K562 blood
24 chr13:48523200-48534000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr13:48523200-48536600 Weak transcription Placenta Amnion Placenta Amnion
26 chr13:48524200-48530800 Weak transcription Fetal Brain Male brain
27 chr13:48524800-48531200 Weak transcription Lung lung
28 chr13:48524800-48531600 Weak transcription Osteobl bone
29 chr13:48525000-48530800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr13:48525200-48531200 Weak transcription Fetal Stomach stomach
31 chr13:48525200-48531600 Weak transcription HSMMtube muscle
32 chr13:48525800-48532400 Strong transcription Duodenum Smooth Muscle Duodenum
33 chr13:48526400-48532600 Strong transcription Primary T helper cells PMA-I stimulated --
34 chr13:48526400-48533600 Weak transcription Right Ventricle heart
35 chr13:48526600-48531400 Weak transcription NHEK skin
36 chr13:48526600-48531600 Weak transcription Primary T helper naive cells from peripheral blood blood
37 chr13:48527200-48531200 Weak transcription Small Intestine intestine
38 chr13:48527400-48530800 Weak transcription Thymus Thymus
39 chr13:48527400-48531400 Weak transcription Pancreas Pancrea
40 chr13:48527800-48530800 Weak transcription Fetal Kidney kidney
41 chr13:48528000-48545800 Weak transcription Colon Smooth Muscle Colon
42 chr13:48528400-48531400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr13:48528600-48541000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr13:48528800-48531400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr13:48528800-48531400 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr13:48529000-48530800 Weak transcription Liver Liver
47 chr13:48529000-48530800 Weak transcription Placenta Placenta
48 chr13:48529200-48531200 Weak transcription Primary T regulatory cells fromperipheralblood blood
49 chr13:48529200-48537200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr13:48529400-48531400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015