The 2.0 version of rSNPBase

Variant report

Variant rs1185727
Chromosome Location chr13:48607608-48607609
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48576000-48610800 Weak transcription Primary T cells fromperipheralblood blood
2 chr13:48576000-48611400 Weak transcription Left Ventricle heart
3 chr13:48576600-48610200 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr13:48584000-48610800 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr13:48584200-48611200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr13:48599600-48610200 Weak transcription HepG2 liver
7 chr13:48602000-48611200 Weak transcription Brain Anterior Caudate brain
8 chr13:48602400-48611000 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr13:48602600-48610800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr13:48602800-48611400 Weak transcription Aorta Aorta
11 chr13:48603000-48610400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
12 chr13:48603000-48611000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr13:48603200-48610800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr13:48603400-48610200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr13:48603400-48610800 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr13:48603800-48610800 Weak transcription Rectal Smooth Muscle rectum
17 chr13:48603800-48611400 Weak transcription Ovary ovary
18 chr13:48604000-48608200 ZNF genes & repeats Primary hematopoietic stem cells blood
19 chr13:48604600-48609000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr13:48604800-48608200 ZNF genes & repeats Fetal Lung lung
21 chr13:48604800-48609200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr13:48605000-48608400 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
23 chr13:48605000-48611000 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr13:48605200-48609200 ZNF genes & repeats Dnd41 blood
25 chr13:48605400-48610800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr13:48605400-48610800 Weak transcription Liver Liver
27 chr13:48605400-48610800 Weak transcription NHLF lung
28 chr13:48605600-48608600 Weak transcription Primary T cells from cord blood blood
29 chr13:48605600-48609000 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr13:48605600-48610200 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr13:48606200-48611000 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr13:48606400-48610800 Weak transcription Primary B cells from peripheral blood blood
33 chr13:48606600-48610800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr13:48606600-48610800 Weak transcription Duodenum Mucosa Duodenum
35 chr13:48606600-48611000 Weak transcription Thymus Thymus
36 chr13:48606600-48611400 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr13:48606800-48610800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr13:48606800-48610800 Weak transcription HUVEC blood vessel
39 chr13:48607000-48607800 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr13:48607000-48610000 Weak transcription Fetal Thymus thymus
41 chr13:48607000-48610400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr13:48607000-48610400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr13:48607000-48610800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr13:48607000-48610800 Weak transcription Fetal Stomach stomach
45 chr13:48607000-48611000 Weak transcription Primary B cells from cord blood blood
46 chr13:48607000-48611200 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr13:48607000-48611400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr13:48607000-48611400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr13:48607200-48610400 Weak transcription Fetal Kidney kidney
50 chr13:48607200-48610600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015