Variant report

Variant	rs9568024
Chromosome Location	chr13:48785255-48785256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12870184	0.81[ASN][1000 genomes]
rs12875956	0.81[ASN][1000 genomes]
rs2010173	0.81[ASN][1000 genomes]
rs6561441	0.81[ASN][1000 genomes]
rs6561443	0.81[ASN][1000 genomes]
rs7320402	0.81[ASN][1000 genomes]
rs9526462	0.81[ASN][1000 genomes]
rs9534973	0.81[ASN][1000 genomes]
rs9534974	0.81[ASN][1000 genomes]
rs9534976	0.81[ASN][1000 genomes]
rs9534980	0.81[ASN][1000 genomes]
rs9534982	0.81[ASN][1000 genomes]
rs9534985	0.81[ASN][1000 genomes]
rs9534987	0.81[ASN][1000 genomes]
rs9562809	0.81[ASN][1000 genomes]
rs9562811	0.81[ASN][1000 genomes]
rs9562815	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3327569	chr13:48743550-48798094	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043294	chr13:48762477-48810028	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv1031	chr13:48766510-48790172	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3518051	chr13:48778434-48785921	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3518063	chr13:48778434-48785921	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv498811	chr13:48778651-48785786	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv13983	chr13:48782466-48785802	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48784200-48792600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:48784800-48788800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:48784800-48791400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr13:48785000-48790000	Weak transcription	Osteobl	bone
5	chr13:48785200-48785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:48785200-48785800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:48785200-48788600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:48785200-48788600	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links