Variant report

Variant	rs9562815
Chromosome Location	chr13:48862396-48862397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48855575..48857168-chr13:48860867..48862627,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12100135	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs12871662	0.86[ASN][1000 genomes]
rs12875750	0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs1573601	0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1894255	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs1925744	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1925745	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs198563	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs198584	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs198590	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs198604	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs198607	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs198612	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs198634	0.82[ASN][1000 genomes]
rs2253520	0.82[ASN][1000 genomes]
rs2406933	0.83[ASN][1000 genomes]
rs2854345	0.82[ASN][1000 genomes]
rs34217484	0.81[ASN][1000 genomes]
rs3803188	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs3809328	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs3818455	0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs520342	0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs61973349	0.86[ASN][1000 genomes]
rs7358982	0.82[ASN][1000 genomes]
rs9316367	0.87[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9316369	0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs9534998	0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs9535000	0.82[ASN][1000 genomes]
rs9535003	0.84[ASN][1000 genomes]
rs9535006	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9535009	0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9568024	0.81[AFR][1000 genomes]
rs9568025	0.81[AFR][1000 genomes]
rs9568026	0.84[ASN][1000 genomes]
rs9568027	0.84[ASN][1000 genomes]
rs9568028	0.85[ASN][1000 genomes]
rs9568032	0.82[ASN][1000 genomes]
rs9568033	0.82[ASN][1000 genomes]
rs9568034	0.82[ASN][1000 genomes]
rs9568035	0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9562815	ITM2B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
2	chr13:48862000-48863000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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