Variant report

Variant	rs9535009
Chromosome Location	chr13:48866464-48866465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48864151..48871869-chr13:48872289..48878751,15	K562	blood:
2	chr13:48864151..48868516-chr13:48876276..48879095,3	K562	blood:
3	chr13:48865268..48867558-chr13:48872289..48875605,4	K562	blood:

Variant related genes	Relation type
ENSG00000231473	Chromatin interaction
ENSG00000139687	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10219833	0.89[EUR][1000 genomes]
rs12100135	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12583516	0.89[ASN][1000 genomes]
rs12871662	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12871740	0.85[EUR][1000 genomes]
rs12875750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1573601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886795	0.85[EUR][1000 genomes]
rs1894255	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap]
rs1925744	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1925745	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1951775	0.85[CEU][hapmap]
rs1981434	0.90[CEU][hapmap]
rs198561	0.84[EUR][1000 genomes]
rs198563	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs198584	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs198590	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs198604	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs198607	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.95[MKK][hapmap];0.91[TSI][hapmap]
rs198612	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs198619	0.90[CEU][hapmap]
rs198634	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2243461	0.84[EUR][1000 genomes]
rs2243626	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2248488	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2251813	0.84[EUR][1000 genomes]
rs2253520	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2254423	0.84[EUR][1000 genomes]
rs2406933	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2854345	0.95[ASN][1000 genomes]
rs2854355	0.88[EUR][1000 genomes]
rs34217484	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs375105	0.81[EUR][1000 genomes]
rs3803188	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3809328	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3818455	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4151450	0.90[CEU][hapmap]
rs4151520	0.88[ASN][1000 genomes]
rs4594153	0.86[EUR][1000 genomes]
rs4600372	0.83[EUR][1000 genomes]
rs520342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61973349	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358982	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7984554	0.85[EUR][1000 genomes]
rs7984795	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs7999447	0.85[EUR][1000 genomes]
rs8001315	0.85[EUR][1000 genomes]
rs9316367	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9316369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9526465	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs9526466	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9526470	0.91[EUR][1000 genomes]
rs9534998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535000	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535002	0.84[EUR][1000 genomes]
rs9535003	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9535007	0.86[EUR][1000 genomes]
rs9535011	0.89[EUR][1000 genomes]
rs9535032	0.86[CEU][hapmap]
rs9562815	0.86[ASN][1000 genomes]
rs9568025	0.87[ASN][1000 genomes]
rs9568026	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568027	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568028	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9568029	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9568032	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568033	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568034	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568035	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs990814	0.86[CEU][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs9535009	ATAD2	trans	parietal	SCAN
rs9535009	ITM2B	cis	lymphoblastoid	seeQTL
rs9535009	LPAR6	cis	parietal	SCAN
rs9535009	ITM2B	Cis_1M	lymphoblastoid	RTeQTL
rs9535009	C13orf1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
2	chr13:48863000-48876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:48865600-48866600	Enhancers	Adipose Nuclei	Adipose
4	chr13:48865600-48866600	Enhancers	Fetal Heart	heart
5	chr13:48865600-48868000	Enhancers	Stomach Mucosa	stomach
6	chr13:48865800-48866600	Enhancers	Psoas Muscle	Psoas
7	chr13:48865800-48867400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:48865800-48867800	Enhancers	Liver	Liver
9	chr13:48865800-48867800	Enhancers	Duodenum Mucosa	Duodenum
10	chr13:48865800-48867800	Enhancers	Fetal Intestine Large	intestine
11	chr13:48865800-48867800	Enhancers	Fetal Intestine Small	intestine
12	chr13:48866200-48866600	Enhancers	Gastric	stomach
13	chr13:48866200-48866600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr13:48866200-48866600	Enhancers	HepG2	liver
15	chr13:48866200-48868000	Enhancers	Small Intestine	intestine
16	chr13:48866200-48876800	Weak transcription	Pancreas	Pancrea
17	chr13:48866200-48877200	Weak transcription	Left Ventricle	heart
18	chr13:48866400-48867400	Enhancers	Placenta	Placenta
19	chr13:48866400-48869800	Weak transcription	Fetal Thymus	thymus
20	chr13:48866400-48870600	Weak transcription	Thymus	Thymus

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