Variant report

Variant	rs9568035
Chromosome Location	chr13:48929374-48929375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs12100135	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs12430215	0.90[CEU][hapmap]
rs12583516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12871662	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12875750	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1573601	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1894255	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925744	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1925745	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1981434	0.81[CEU][hapmap]
rs198561	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs198563	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs198570	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs198584	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs198590	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs198604	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs198607	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs198612	1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs198619	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs198634	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248488	0.81[CEU][hapmap]
rs2253520	0.92[ASN][1000 genomes]
rs2406933	0.93[ASN][1000 genomes]
rs2854345	0.99[ASN][1000 genomes]
rs2854355	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3020645	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34217484	0.91[ASN][1000 genomes]
rs375105	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3803188	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs3809328	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs3818455	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs399413	0.89[CEU][hapmap]
rs4151450	0.80[EUR][1000 genomes]
rs4151520	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs431406	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs471911	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs520342	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61973349	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7358982	0.92[ASN][1000 genomes]
rs7984795	0.81[CEU][hapmap]
rs9316367	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9316369	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9316381	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9316388	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9316393	0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs9331991	0.93[CHB][hapmap]
rs9526465	0.81[CEU][hapmap]
rs9526466	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9526475	0.89[CEU][hapmap]
rs9534998	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535000	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535003	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9535006	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535009	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535016	0.81[EUR][1000 genomes]
rs9562815	0.82[ASN][1000 genomes]
rs9562819	0.85[CEU][hapmap]
rs9568025	0.84[ASN][1000 genomes]
rs9568026	0.94[ASN][1000 genomes]
rs9568027	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568028	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568029	0.81[CEU][hapmap]
rs9568032	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568033	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568047	0.81[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9568035	ITM2B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48908400-48944800	Weak transcription	Small Intestine	intestine
2	chr13:48909000-48972200	Weak transcription	NHEK	skin
3	chr13:48911800-48948400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:48913400-48944200	Weak transcription	Aorta	Aorta
6	chr13:48914000-48944400	Weak transcription	Fetal Stomach	stomach
7	chr13:48914000-48965800	Weak transcription	Lung	lung
8	chr13:48914800-48972000	Weak transcription	NHLF	lung
9	chr13:48916200-48947400	Weak transcription	Fetal Brain Male	brain
10	chr13:48916400-48948400	Weak transcription	NH-A	brain
11	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
12	chr13:48917800-48944400	Weak transcription	HepG2	liver
13	chr13:48918000-48954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:48918200-48937200	Weak transcription	Placenta	Placenta
15	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
18	chr13:48923200-48929800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:48925000-48929800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:48925000-48934200	Weak transcription	HMEC	breast
21	chr13:48925000-48944200	Weak transcription	HSMMtube	muscle
22	chr13:48925000-48962800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr13:48925200-48947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:48925200-48949000	Weak transcription	Fetal Kidney	kidney
25	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:48925400-48933000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr13:48925400-48939600	Weak transcription	Osteobl	bone
28	chr13:48925400-48948200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:48925400-48976400	Weak transcription	Ovary	ovary
30	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr13:48925800-48943600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr13:48926000-48929600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:48926200-48949200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:48926200-48954600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr13:48926400-48943400	Weak transcription	Left Ventricle	heart
36	chr13:48926600-48930200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr13:48927600-48934400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr13:48927800-48934200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr13:48928000-48948000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr13:48928200-48932800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr13:48928200-48934200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr13:48928200-48934200	Weak transcription	Brain Hippocampus Middle	brain
44	chr13:48928200-48934200	Weak transcription	NHDF-Ad	bronchial
45	chr13:48928200-48937200	Weak transcription	Liver	Liver
46	chr13:48928200-48948400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr13:48928200-48948400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr13:48928200-48954400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr13:48928200-48954600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr13:48928200-48971800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links