Variant report

Variant	rs9568676
Chromosome Location	chr13:52500259-52500260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52379385..52381613-chr13:52498581..52500814,2	K562	blood:
2	chr13:52491156..52495004-chr13:52498889..52501522,3	MCF-7	breast:
3	chr13:52493211..52494944-chr13:52498242..52500919,2	K562	blood:
4	chr13:52478432..52480213-chr13:52499917..52502215,2	MCF-7	breast:
5	chr13:52498426..52500367-chr13:52585440..52587575,2	MCF-7	breast:
6	chr13:52494744..52497994-chr13:52498651..52501813,3	K562	blood:

Variant related genes	Relation type
ENSG00000253710	Chromatin interaction
ENSG00000123191	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9591439	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv455888	chr13:52491193-52570728	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv561649	chr13:52491193-52570728	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	esv3420274	chr13:52498051-52502249	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52481600-52502000	Weak transcription	Right Atrium	heart
2	chr13:52481800-52506000	Weak transcription	Ovary	ovary
3	chr13:52486400-52523400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:52486800-52502000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr13:52487000-52507800	Weak transcription	Pancreas	Pancrea
6	chr13:52488000-52507800	Weak transcription	Brain Anterior Caudate	brain
7	chr13:52488000-52508200	Weak transcription	Brain Angular Gyrus	brain
8	chr13:52488000-52508200	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:52488200-52505800	Weak transcription	Brain Germinal Matrix	brain
10	chr13:52488200-52508000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:52488200-52542200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:52489600-52508400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr13:52490000-52509400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr13:52492000-52508400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:52492600-52539600	Weak transcription	Fetal Brain Male	brain
16	chr13:52494400-52558000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr13:52494800-52527000	Weak transcription	Fetal Lung	lung
18	chr13:52495000-52500800	Strong transcription	Fetal Intestine Small	intestine
19	chr13:52495400-52512600	Weak transcription	Colon Smooth Muscle	Colon
20	chr13:52495600-52501800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr13:52495600-52508200	Weak transcription	Brain Substantia Nigra	brain
22	chr13:52495600-52515000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:52496200-52508200	Weak transcription	Stomach Mucosa	stomach
24	chr13:52496200-52508200	Weak transcription	Spleen	Spleen
25	chr13:52496600-52500600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr13:52496600-52507200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr13:52496600-52524200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:52497200-52501400	Weak transcription	Left Ventricle	heart
29	chr13:52497400-52508400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:52497600-52501400	Enhancers	K562	blood
31	chr13:52497600-52501800	Weak transcription	Fetal Stomach	stomach
32	chr13:52497600-52505800	Weak transcription	Aorta	Aorta
33	chr13:52497600-52505800	Weak transcription	Fetal Intestine Large	intestine
34	chr13:52497600-52507800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr13:52497600-52508000	Weak transcription	Fetal Brain Female	brain
36	chr13:52497600-52508800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr13:52497600-52519600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr13:52497800-52501800	Weak transcription	Right Ventricle	heart
39	chr13:52497800-52505800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr13:52497800-52506000	Weak transcription	Adipose Nuclei	Adipose
41	chr13:52498200-52502400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:52498400-52500600	Enhancers	Placenta	Placenta
43	chr13:52498800-52505800	Weak transcription	Fetal Muscle Leg	muscle
44	chr13:52498800-52505800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr13:52499200-52502000	Weak transcription	Liver	Liver
46	chr13:52499800-52500400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr13:52499800-52500400	Genic enhancers	Fetal Heart	heart
48	chr13:52499800-52507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr13:52500000-52500600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr13:52500000-52500800	Strong transcription	HepG2	liver

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