Variant report

Variant	rs9573834
Chromosome Location	chr13:76906272-76906273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12427674	0.84[EUR][1000 genomes]
rs17066047	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17066085	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4884049	0.85[ASN][1000 genomes]
rs56956147	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7986711	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9565256	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9573837	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9635007	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76899200-76911400	Weak transcription	Aorta	Aorta
2	chr13:76903800-76906400	Enhancers	Rectal Smooth Muscle	rectum
3	chr13:76904200-76911600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:76905000-76907000	Enhancers	Colon Smooth Muscle	Colon
5	chr13:76905000-76907000	Enhancers	Fetal Lung	lung
6	chr13:76905200-76912000	Weak transcription	Psoas Muscle	Psoas
7	chr13:76905400-76908400	Enhancers	Fetal Heart	heart
8	chr13:76906000-76906800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:76906000-76906800	Enhancers	Stomach Smooth Muscle	stomach
10	chr13:76906000-76907000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:76906000-76907400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:76906000-76907400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:76906200-76906400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:76906200-76907000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr13:76906200-76907000	Enhancers	Fetal Stomach	stomach
16	chr13:76906200-76907400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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