Variant report

Variant	rs9576144
Chromosome Location	chr13:37518022-37518023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1127446	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2010494	0.80[CHB][hapmap]
rs2078022	0.96[CEU][hapmap];0.80[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4943438	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4943439	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4943440	0.92[CEU][hapmap];0.80[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8000946	0.96[CEU][hapmap];0.80[CHB][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9315455	0.90[CHB][hapmap];0.87[JPT][hapmap];0.98[ASN][1000 genomes]
rs9469	0.92[CEU][hapmap];0.80[CHB][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9531997	0.94[ASN][1000 genomes]
rs9566172	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9576145	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9576146	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9576147	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9576149	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9576150	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9576151	0.96[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9576156	0.80[CHB][hapmap];0.80[YRI][hapmap]
rs9576167	0.80[CHB][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv522336	chr13:37305641-37584838	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37515400-37533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:37516800-37525200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:37517200-37538400	Weak transcription	Fetal Brain Male	brain
4	chr13:37517600-37529000	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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