Variant report

Variant	rs9576167
Chromosome Location	chr13:37649395-37649396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:37572371..37574894-chr13:37648563..37650120,2	MCF-7	breast:
2	chr13:37648756..37649454-chr13:38176633..38177228,3	MCF-7	breast:
3	chr13:37648642..37649599-chr13:38176615..38177587,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120697	Chromatin interaction
ENSG00000120699	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11147624	0.85[JPT][hapmap]
rs11147625	0.85[JPT][hapmap]
rs11147626	0.85[JPT][hapmap]
rs11147627	0.85[JPT][hapmap]
rs1856028	0.84[CEU][hapmap]
rs2078022	0.84[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap]
rs2243710	0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs2323396	0.85[JPT][hapmap]
rs3818380	0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs3852618	0.85[JPT][hapmap]
rs3852619	0.90[JPT][hapmap]
rs3864999	0.85[JPT][hapmap]
rs4054546	0.88[JPT][hapmap]
rs4943438	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4943439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4943440	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs8000946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap]
rs9315455	0.85[JPT][hapmap]
rs945632	0.84[CEU][hapmap]
rs9469	1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.81[MKK][hapmap];0.80[YRI][hapmap]
rs954370	0.80[CHD][hapmap];1.00[JPT][hapmap]
rs9547711	0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs9547713	0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs9547724	0.99[ASN][1000 genomes]
rs9566177	0.85[JPT][hapmap]
rs9566178	0.83[JPT][hapmap]
rs9576144	0.80[CHB][hapmap];0.81[YRI][hapmap]
rs9576151	0.84[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.91[YRI][hapmap];0.81[ASN][1000 genomes]
rs9576156	1.00[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.84[ASN][1000 genomes]
rs9576159	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576161	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576168	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9576170	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9576176	0.85[JPT][hapmap]
rs9576177	0.85[JPT][hapmap]
rs9576178	0.85[JPT][hapmap]
rs9576181	0.85[JPT][hapmap]
rs9603126	0.94[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3377840	chr13:37631001-37656330	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37648800-37651400	Enhancers	Primary neutrophils fromperipheralblood	blood

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