Variant report

Variant	rs9576670
Chromosome Location	chr13:39560997-39560998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39559201..39562021-chr13:39568354..39570299,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11147745	0.98[ASN][1000 genomes]
rs12428445	0.98[ASN][1000 genomes]
rs12429324	0.98[ASN][1000 genomes]
rs12429338	0.98[ASN][1000 genomes]
rs12430450	0.98[ASN][1000 genomes]
rs12431316	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1326405	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17058947	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17058990	0.94[ASN][1000 genomes]
rs17059014	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2094252	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2094253	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2094254	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2104518	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274384	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2274385	0.98[ASN][1000 genomes]
rs2296648	0.98[ASN][1000 genomes]
rs34316151	0.99[ASN][1000 genomes]
rs34327528	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35804724	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35864330	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3751377	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3751378	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3751379	0.98[ASN][1000 genomes]
rs3812879	0.83[ASN][1000 genomes]
rs3922615	0.85[EUR][1000 genomes]
rs4142398	0.84[ASN][1000 genomes]
rs55809136	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66496062	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs66908302	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67296293	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73169457	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7317852	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7318688	0.94[ASN][1000 genomes]
rs7327748	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs747752	0.98[ASN][1000 genomes]
rs7987207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994530	0.86[ASN][1000 genomes]
rs7997052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7998475	0.99[ASN][1000 genomes]
rs8000929	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566385	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9566389	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9566391	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566393	0.84[ASN][1000 genomes]
rs9566396	0.84[ASN][1000 genomes]
rs9576669	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9576673	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576674	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576676	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576677	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576678	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576679	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576681	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576683	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576684	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576685	0.99[ASN][1000 genomes]
rs9576686	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9576688	0.99[ASN][1000 genomes]
rs9576690	0.98[ASN][1000 genomes]
rs9576691	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9576692	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9576693	0.97[ASN][1000 genomes]
rs9576695	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576696	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576697	0.98[ASN][1000 genomes]
rs9576698	0.98[ASN][1000 genomes]
rs9576699	0.98[ASN][1000 genomes]
rs9576700	0.98[ASN][1000 genomes]
rs9576701	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576703	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9576705	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576707	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576710	0.86[ASN][1000 genomes]
rs9576711	0.86[ASN][1000 genomes]
rs9576717	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9576670	C13orf23	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39555600-39564600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:39555600-39564600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:39560600-39561000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr13:39560600-39561000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:39560600-39561000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:39560600-39561000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:39560600-39561000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:39560600-39561200	Enhancers	HepG2	liver
9	chr13:39560600-39561400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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