Variant report

Variant	rs9582733
Chromosome Location	chr13:88652803-88652804
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10400637	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72641970	1.00[ASN][1000 genomes]
rs72641974	1.00[ASN][1000 genomes]
rs72641983	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72643012	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72643017	1.00[EUR][1000 genomes]
rs74106813	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106814	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7998861	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582681	1.00[ASN][1000 genomes]
rs9586123	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900787	chr13:88554160-88680762	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900788	chr13:88554160-88690980	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900789	chr13:88554160-88699143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900790	chr13:88585928-88891870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900791	chr13:88623302-88771495	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900792	chr13:88623302-88871759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3447768	chr13:88637000-88673742	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88651200-88653000	Enhancers	NH-A	brain
2	chr13:88651400-88653000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:88651400-88653000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr13:88651400-88653400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:88651400-88653600	Enhancers	HSMM	muscle
6	chr13:88651400-88653800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:88652200-88653400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:88652200-88653600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:88652400-88653000	Enhancers	NHLF	lung
10	chr13:88652800-88653000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:88652800-88657200	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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