Variant report

Variant	rs9583419
Chromosome Location	chr13:110382164-110382165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110364981..110367185-chr13:110381233..110382839,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11840368	1.00[AMR][1000 genomes]
rs56140757	1.00[AMR][1000 genomes]
rs74123726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110377400-110382200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr13:110378400-110383000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr13:110378400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:110378600-110383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:110380400-110382600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:110380600-110382200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:110380600-110382200	Enhancers	Fetal Kidney	kidney
8	chr13:110380600-110382600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:110380800-110382200	Enhancers	Brain Germinal Matrix	brain
10	chr13:110380800-110382200	Bivalent Enhancer	Fetal Stomach	stomach
11	chr13:110381000-110382200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:110381000-110382200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr13:110381000-110382400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:110381000-110382400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr13:110381000-110382400	Enhancers	Placenta Amnion	Placenta Amnion
16	chr13:110381000-110382600	Enhancers	Fetal Thymus	thymus
17	chr13:110381200-110382200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:110381200-110382200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr13:110381200-110382200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:110381200-110382200	Enhancers	Fetal Heart	heart
21	chr13:110381200-110382400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr13:110381200-110382400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr13:110381200-110382600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:110381400-110382200	Bivalent Enhancer	HepG2	liver
25	chr13:110381400-110382400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr13:110381400-110382400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:110381600-110382200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr13:110381800-110382200	Enhancers	Brain Anterior Caudate	brain
29	chr13:110381800-110382200	Enhancers	Brain Hippocampus Middle	brain
30	chr13:110381800-110382200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
31	chr13:110381800-110383400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr13:110381800-110383600	Enhancers	Primary hematopoietic stem cells	blood
33	chr13:110381800-110383800	Weak transcription	Fetal Muscle Leg	muscle
34	chr13:110382000-110382200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr13:110382000-110382200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr13:110382000-110382200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr13:110382000-110382200	Enhancers	Ovary	ovary
38	chr13:110382000-110382400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr13:110382000-110382600	Enhancers	HMEC	breast
40	chr13:110382000-110383600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr13:110382000-110386000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links