Variant report

Variant	rs11840368
Chromosome Location	chr13:110384449-110384450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56140757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56395277	0.89[AFR][1000 genomes]
rs57201472	0.89[AFR][1000 genomes]
rs74123726	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583419	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3340837	chr13:110384401-110386499	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110378400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:110382000-110386000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:110382200-110384600	Active TSS	Primary B cells from cord blood	blood
4	chr13:110382200-110384800	Active TSS	Dnd41	blood
5	chr13:110382200-110385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:110382200-110388800	Weak transcription	Fetal Heart	heart
7	chr13:110382400-110384600	Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr13:110382600-110389800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:110383600-110384600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
10	chr13:110383800-110384600	Active TSS	Primary T cells from cord blood	blood
11	chr13:110383800-110384600	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr13:110384000-110384600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr13:110384000-110384600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr13:110384000-110384600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:110384000-110384600	Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr13:110384200-110384600	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr13:110384200-110384600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:110384400-110384600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr13:110384400-110384600	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr13:110384400-110384600	Active TSS	Ovary	ovary
21	chr13:110384400-110385800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr13:110384400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:110384400-110386400	ZNF genes & repeats	Fetal Thymus	thymus
24	chr13:110384400-110387400	Weak transcription	Primary hematopoietic stem cells	blood

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