Variant report
| Variant | rs9589354 |
|---|---|
| Chromosome Location | chr13:92425338-92425339 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:91996442..92000452-chr13:92423521..92427515,3 | K562 | blood: | |
| 2 | chr13:92425245..92427379-chr13:92459575..92462429,2 | K562 | blood: | |
| 3 | chr13:92408850..92411747-chr13:92422307..92426184,4 | K562 | blood: | |
| 4 | chr13:92416606..92418610-chr13:92424268..92426806,2 | K562 | blood: | |
| 5 | chr13:92403864..92405502-chr13:92423546..92426360,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000215417 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11842511 | 1.00[AMR][1000 genomes] |
| rs11843736 | 1.00[AMR][1000 genomes] |
| rs9301752 | 1.00[AMR][1000 genomes] |
| rs9583958 | 1.00[AMR][1000 genomes] |
| rs9583959 | 1.00[AMR][1000 genomes] |
| rs9583960 | 1.00[AMR][1000 genomes] |
| rs9583961 | 1.00[AMR][1000 genomes] |
| rs9583963 | 1.00[AMR][1000 genomes] |
| rs9583964 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9589347 | 1.00[AMR][1000 genomes] |
| rs9589349 | 1.00[AMR][1000 genomes] |
| rs9589350 | 1.00[AMR][1000 genomes] |
| rs9589351 | 1.00[AMR][1000 genomes] |
| rs9589352 | 1.00[AMR][1000 genomes] |
| rs9589353 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9589356 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049382 | chr13:92024240-92521180 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv541873 | chr13:92024240-92521180 | Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2753383 | chr13:92226599-92462699 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv529268 | chr13:92267310-92531263 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv456065 | chr13:92383193-92507887 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv562719 | chr13:92383193-92507887 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv948820 | chr13:92408505-92519053 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | nsv524271 | chr13:92419769-92501664 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv562720 | chr13:92419769-92501664 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 10 | nsv1036226 | chr13:92421721-92501284 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 11 | nsv1053048 | chr13:92421721-92501558 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 12 | nsv1053597 | chr13:92421721-92502205 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:92417800-92426800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr13:92424800-92425800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 3 | chr13:92425200-92427200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 4 | chr13:92425200-92427400 | Enhancers | Cortex derived primary cultured neurospheres | brain |
