Variant report

Variant	rs9589922
Chromosome Location	chr13:94821997-94821998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129085	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10161943	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1328821	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1328822	0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16949545	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs475933	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs494817	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs497636	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs497836	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs502029	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs504825	0.96[EUR][1000 genomes]
rs541134	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs543744	0.91[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs588792	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs589258	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs591981	0.91[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs603741	0.91[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs605033	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61570339	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs618895	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs622908	0.96[EUR][1000 genomes]
rs637086	0.96[EUR][1000 genomes]
rs638325	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs685049	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9561507	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9589918	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv430599	chr13:94699399-94934930	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933263	chr13:94711183-94897124	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051276	chr13:94745995-94872494	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv526048	chr13:94767311-94880219	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv562754	chr13:94770794-94895346	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94807400-94823400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:94814800-94825400	Weak transcription	Fetal Intestine Small	intestine
3	chr13:94820200-94822400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:94820600-94823400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:94821000-94822400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr13:94821000-94822600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr13:94821200-94822400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:94821200-94822600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:94821200-94822600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:94821200-94823200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:94821200-94823600	Enhancers	Liver	Liver
12	chr13:94821200-94824200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:94821400-94822200	Enhancers	Adipose Nuclei	Adipose
14	chr13:94821400-94822800	Enhancers	HSMM	muscle
15	chr13:94821400-94822800	Enhancers	NH-A	brain
16	chr13:94821400-94823000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:94821400-94823000	Enhancers	Fetal Lung	lung
18	chr13:94821400-94823200	Enhancers	Brain Anterior Caudate	brain
19	chr13:94821600-94822000	Enhancers	Brain Hippocampus Middle	brain
20	chr13:94821600-94822000	Enhancers	Osteobl	bone
21	chr13:94821600-94822400	Enhancers	Brain Germinal Matrix	brain
22	chr13:94821600-94823400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:94821600-94823600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr13:94821800-94822000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:94821800-94822000	Enhancers	Aorta	Aorta
26	chr13:94821800-94822400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:94821800-94822400	Enhancers	HSMMtube	muscle
28	chr13:94821800-94822600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:94821800-94822800	Enhancers	Fetal Brain Male	brain
30	chr13:94821800-94822800	Enhancers	Fetal Muscle Leg	muscle
31	chr13:94821800-94823200	Enhancers	Fetal Stomach	stomach
32	chr13:94821800-94824400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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