Variant report

Variant	rs9594177
Chromosome Location	chr13:37532698-37532699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17054789	0.98[AFR][1000 genomes]
rs17054790	0.87[AFR][1000 genomes]
rs17054792	0.85[AFR][1000 genomes]
rs17054829	0.84[AFR][1000 genomes]
rs17054835	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17054838	0.81[AFR][1000 genomes]
rs73543820	0.80[AFR][1000 genomes]
rs74045176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9594180	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9594184	0.87[AFR][1000 genomes]
rs9603124	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv522336	chr13:37305641-37584838	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37515400-37533000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:37517200-37538400	Weak transcription	Fetal Brain Male	brain
3	chr13:37519600-37561400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:37520400-37538000	Weak transcription	Colonic Mucosa	Colon
5	chr13:37520600-37560800	Weak transcription	Small Intestine	intestine
6	chr13:37520800-37538000	Weak transcription	HepG2	liver
7	chr13:37521000-37536600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:37521200-37538200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:37521400-37537800	Weak transcription	NHLF	lung
10	chr13:37521400-37538000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:37521400-37538400	Weak transcription	Aorta	Aorta
12	chr13:37521400-37542800	Weak transcription	A549	lung
13	chr13:37521600-37534800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr13:37521600-37535200	Weak transcription	NHEK	skin
15	chr13:37521600-37537800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr13:37521600-37538000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:37521600-37538000	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:37521600-37538200	Weak transcription	HSMMtube	muscle
19	chr13:37521800-37539200	Weak transcription	K562	blood
20	chr13:37522000-37538000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr13:37522000-37538400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr13:37522600-37541000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr13:37522600-37548800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:37522800-37547000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:37523000-37532800	Strong transcription	Fetal Intestine Large	intestine
26	chr13:37523000-37538400	Weak transcription	Lung	lung
27	chr13:37523000-37545600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr13:37523200-37558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr13:37523400-37538000	Weak transcription	Brain Substantia Nigra	brain
30	chr13:37523400-37538000	Weak transcription	Esophagus	oesophagus
31	chr13:37523600-37533800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr13:37523600-37536600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr13:37523800-37536800	Weak transcription	Brain Germinal Matrix	brain
34	chr13:37523800-37538000	Weak transcription	Brain Anterior Caudate	brain
35	chr13:37524000-37563800	Weak transcription	Psoas Muscle	Psoas
36	chr13:37524600-37538400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr13:37524600-37572400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr13:37524800-37546400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr13:37525000-37560800	Weak transcription	Fetal Heart	heart
40	chr13:37525600-37535000	Weak transcription	NHDF-Ad	bronchial
41	chr13:37525600-37544800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr13:37525800-37537400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr13:37526000-37538200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr13:37526200-37538000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr13:37526600-37535200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr13:37526600-37535400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr13:37526600-37536000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr13:37526600-37536600	Weak transcription	Left Ventricle	heart
49	chr13:37526600-37537000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr13:37526600-37538000	Weak transcription	Brain Cingulate Gyrus	brain

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