Variant report

Variant	rs74045176
Chromosome Location	chr13:37593417-37593418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:37590129..37593906-chr13:37630964..37633861,4	MCF-7	breast:
2	chr13:37573285..37577933-chr13:37589670..37594004,8	MCF-7	breast:
3	chr13:37571989..37576230-chr13:37592486..37599969,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120699	Chromatin interaction
ENSG00000102710	Chromatin interaction
ENSG00000120697	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17054789	0.84[AFR][1000 genomes]
rs17054792	1.00[AFR][1000 genomes]
rs17054829	0.95[AFR][1000 genomes]
rs17054835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17054838	0.91[AFR][1000 genomes]
rs57719094	0.89[AFR][1000 genomes]
rs59899061	0.89[AFR][1000 genomes]
rs73543820	0.91[AFR][1000 genomes]
rs9594177	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9594180	1.00[AMR][1000 genomes]
rs9603124	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37575400-37631200	Weak transcription	Stomach Mucosa	stomach
2	chr13:37576200-37606200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:37576200-37623800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:37576400-37595400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:37576400-37607600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:37576400-37608600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:37576400-37618800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:37576400-37623800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:37576600-37600400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:37576600-37608400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:37576600-37623000	Strong transcription	Liver	Liver
12	chr13:37576600-37625800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr13:37576800-37600600	Strong transcription	HUVEC	blood vessel
14	chr13:37576800-37603000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:37576800-37609000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:37576800-37621200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr13:37576800-37623200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr13:37577000-37608400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr13:37577000-37608600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:37577000-37623000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:37577000-37623400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr13:37577000-37624400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr13:37577200-37623200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr13:37577200-37625200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr13:37577200-37625800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr13:37577200-37625800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr13:37577600-37623600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr13:37578200-37615200	Weak transcription	K562	blood
29	chr13:37580000-37608600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:37580200-37595200	Weak transcription	Fetal Intestine Small	intestine
31	chr13:37581200-37596400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr13:37581600-37595200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr13:37581800-37602200	Weak transcription	Psoas Muscle	Psoas
34	chr13:37581800-37622800	Strong transcription	Dnd41	blood
35	chr13:37582800-37609600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr13:37583000-37622800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr13:37583000-37623400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr13:37583200-37622600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr13:37583400-37596000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr13:37584200-37595400	Weak transcription	Fetal Stomach	stomach
41	chr13:37584200-37595600	Weak transcription	Right Ventricle	heart
42	chr13:37584200-37596200	Weak transcription	Pancreas	Pancrea
43	chr13:37584200-37598000	Weak transcription	Spleen	Spleen
44	chr13:37584200-37602400	Weak transcription	Fetal Heart	heart
45	chr13:37584400-37594200	Weak transcription	NHEK	skin
46	chr13:37584800-37595000	Weak transcription	Brain Angular Gyrus	brain
47	chr13:37584800-37595600	Weak transcription	Aorta	Aorta
48	chr13:37585000-37595600	Weak transcription	Thymus	Thymus
49	chr13:37585400-37598000	Weak transcription	Lung	lung
50	chr13:37585400-37616000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links