Variant report
| Variant | rs57719094 |
|---|---|
| Chromosome Location | chr13:37650666-37650667 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10507444 | 1.00[ASN][1000 genomes] |
| rs1199997 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1199998 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1200000 | 1.00[ASN][1000 genomes] |
| rs1200001 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1200002 | 1.00[ASN][1000 genomes] |
| rs1200003 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1336165 | 1.00[ASN][1000 genomes] |
| rs17054770 | 1.00[ASN][1000 genomes] |
| rs17054775 | 1.00[ASN][1000 genomes] |
| rs17054789 | 1.00[ASN][1000 genomes] |
| rs17054790 | 1.00[ASN][1000 genomes] |
| rs17054792 | 0.89[AFR][1000 genomes] |
| rs17054829 | 0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17054835 | 0.89[AFR][1000 genomes] |
| rs17054838 | 0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17054925 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17054972 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1924421 | 1.00[ASN][1000 genomes] |
| rs2181788 | 1.00[ASN][1000 genomes] |
| rs4624036 | 1.00[ASN][1000 genomes] |
| rs59899061 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59901477 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs608385 | 1.00[ASN][1000 genomes] |
| rs6563506 | 1.00[ASN][1000 genomes] |
| rs73533924 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73543820 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74045176 | 0.89[AFR][1000 genomes] |
| rs7986414 | 0.92[EUR][1000 genomes] |
| rs7991565 | 0.92[EUR][1000 genomes] |
| rs8001410 | 1.00[ASN][1000 genomes] |
| rs9594184 | 1.00[ASN][1000 genomes] |
| rs9603124 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948975 | chr13:37281203-38280430 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | esv3377840 | chr13:37631001-37656330 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:37648800-37651400 | Enhancers | Primary neutrophils fromperipheralblood | blood |
| 2 | chr13:37650000-37651000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
