Variant report

Variant	rs1199997
Chromosome Location	chr13:37705125-37705126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37703579..37706141-chr13:37717526..37719310,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10507444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1199998	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200000	1.00[ASN][1000 genomes]
rs1200001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200002	1.00[ASN][1000 genomes]
rs1200003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336165	1.00[ASN][1000 genomes]
rs17054770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924421	1.00[ASN][1000 genomes]
rs2181788	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4624036	1.00[ASN][1000 genomes]
rs57719094	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59899061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59901477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608385	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6563506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73533924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543820	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986414	0.92[EUR][1000 genomes]
rs7991565	0.92[EUR][1000 genomes]
rs8001410	1.00[ASN][1000 genomes]
rs9315475	1.00[CHB][hapmap]
rs9547703	1.00[CHB][hapmap]
rs9547704	1.00[CHB][hapmap]
rs9594184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9603124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9603150	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37701000-37707200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37701800-37709200	Weak transcription	Fetal Kidney	kidney
3	chr13:37702200-37707600	Weak transcription	Hela-S3	cervix
4	chr13:37702400-37708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:37702800-37707800	Weak transcription	NH-A	brain
6	chr13:37702800-37708000	Weak transcription	Osteobl	bone
7	chr13:37703600-37708400	Weak transcription	Fetal Lung	lung
8	chr13:37703800-37705400	Enhancers	Colon Smooth Muscle	Colon
9	chr13:37704200-37705200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:37704400-37708600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:37704800-37708600	Enhancers	HUVEC	blood vessel

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