Variant report
| Variant | rs9547704 |
|---|---|
| Chromosome Location | chr13:37514238-37514239 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10507444 | 1.00[CHB][hapmap] |
| rs17054770 | 1.00[CHB][hapmap] |
| rs17054775 | 1.00[CHB][hapmap] |
| rs17054789 | 1.00[CHB][hapmap] |
| rs17054790 | 1.00[CHB][hapmap] |
| rs17054829 | 1.00[CHB][hapmap] |
| rs17054838 | 1.00[CHB][hapmap] |
| rs1924421 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2181788 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2769541 | 0.90[CEU][hapmap];1.00[JPT][hapmap] |
| rs2769542 | 1.00[CHB][hapmap] |
| rs2769543 | 1.00[JPT][hapmap] |
| rs4624036 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs587505 | 0.91[CEU][hapmap];1.00[JPT][hapmap] |
| rs6563506 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs675108 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs688280 | 0.91[CEU][hapmap];1.00[JPT][hapmap] |
| rs9547703 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs9547705 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9547717 | 0.82[CEU][hapmap] |
| rs9594184 | 1.00[CHB][hapmap] |
| rs9603124 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948975 | chr13:37281203-38280430 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv522336 | chr13:37305641-37584838 | Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
