Variant report

Variant	rs2769542
Chromosome Location	chr13:37503495-37503496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10507444	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199997	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199998	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200000	1.00[ASN][1000 genomes]
rs1200001	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200002	1.00[ASN][1000 genomes]
rs1200003	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336165	1.00[ASN][1000 genomes]
rs17054770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054925	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054972	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924421	1.00[ASN][1000 genomes]
rs2181788	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4624036	1.00[ASN][1000 genomes]
rs57719094	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59899061	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59901477	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563506	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73533924	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543820	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001410	1.00[ASN][1000 genomes]
rs9547703	1.00[CHB][hapmap]
rs9547704	1.00[CHB][hapmap]
rs9594184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv522336	chr13:37305641-37584838	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links